View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10497_high_4 (Length: 300)

Name: NF10497_high_4
Description: NF10497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10497_high_4
NF10497_high_4
[»] chr5 (17 HSPs)
chr5 (28-182)||(40335843-40335997)
chr5 (65-177)||(40378347-40378459)
chr5 (235-285)||(40378614-40378664)
chr5 (86-148)||(12975326-12975387)
chr5 (89-177)||(34117569-34117654)
chr5 (95-175)||(2568608-2568689)
chr5 (95-175)||(14295457-14295537)
chr5 (96-151)||(36325986-36326041)
chr5 (84-126)||(30217082-30217124)
chr5 (120-165)||(7470592-7470636)
chr5 (85-177)||(18875310-18875402)
chr5 (84-141)||(18902781-18902837)
chr5 (44-175)||(9202733-9202867)
chr5 (105-177)||(18704085-18704156)
chr5 (95-151)||(18857439-18857494)
chr5 (84-164)||(26390818-26390897)
chr5 (37-139)||(41957430-41957534)
[»] chr6 (8 HSPs)
chr6 (84-175)||(33787773-33787864)
chr6 (84-172)||(24838771-24838859)
chr6 (84-175)||(24782010-24782101)
chr6 (44-177)||(6647338-6647471)
chr6 (105-175)||(4006665-4006735)
chr6 (84-167)||(281876-281959)
chr6 (84-163)||(10154184-10154263)
chr6 (108-175)||(29274281-29274348)
[»] chr4 (15 HSPs)
chr4 (84-176)||(18628571-18628663)
chr4 (84-177)||(30207599-30207691)
chr4 (95-167)||(2996532-2996604)
chr4 (64-175)||(17884019-17884131)
chr4 (84-177)||(49219088-49219181)
chr4 (28-139)||(23819076-23819189)
chr4 (132-175)||(34368828-34368872)
chr4 (84-175)||(52735073-52735164)
chr4 (95-167)||(10192243-10192315)
chr4 (87-175)||(54325068-54325156)
chr4 (84-133)||(56480341-56480390)
chr4 (87-139)||(1408327-1408379)
chr4 (105-164)||(3175913-3175972)
chr4 (64-175)||(43824235-43824346)
chr4 (88-167)||(49085948-49086027)
[»] chr1 (8 HSPs)
chr1 (105-177)||(49517019-49517091)
chr1 (84-175)||(7472263-7472353)
chr1 (96-151)||(25006074-25006128)
chr1 (103-161)||(6231863-6231921)
chr1 (28-133)||(35590863-35590969)
chr1 (95-163)||(4548684-4548752)
chr1 (75-139)||(4549561-4549625)
chr1 (90-177)||(7273973-7274060)
[»] chr7 (13 HSPs)
chr7 (84-175)||(30456478-30456569)
chr7 (66-139)||(6263373-6263446)
chr7 (75-173)||(28165044-28165142)
chr7 (84-166)||(38010674-38010756)
chr7 (89-139)||(18350740-18350790)
chr7 (98-175)||(27548214-27548291)
chr7 (105-151)||(44821935-44821980)
chr7 (95-167)||(1417223-1417295)
chr7 (119-175)||(35536058-35536114)
chr7 (84-167)||(22759145-22759228)
chr7 (84-175)||(27481322-27481413)
chr7 (126-177)||(39591537-39591588)
chr7 (96-175)||(47177587-47177666)
[»] chr8 (13 HSPs)
chr8 (84-139)||(9836882-9836937)
chr8 (84-139)||(11795079-11795134)
chr8 (84-133)||(8062322-8062371)
chr8 (90-174)||(8823427-8823511)
chr8 (107-166)||(4510988-4511047)
chr8 (84-151)||(6509331-6509397)
chr8 (37-126)||(11569436-11569527)
chr8 (84-139)||(28769367-28769422)
chr8 (108-177)||(12361141-12361210)
chr8 (84-156)||(8062495-8062566)
chr8 (84-163)||(31705047-31705127)
chr8 (84-167)||(34551079-34551162)
chr8 (89-133)||(41470344-41470388)
[»] chr2 (12 HSPs)
chr2 (87-177)||(10143121-10143211)
chr2 (75-139)||(35099618-35099682)
chr2 (96-166)||(11513858-11513928)
chr2 (96-139)||(18066115-18066158)
chr2 (96-139)||(18179280-18179323)
chr2 (84-166)||(22681213-22681295)
chr2 (84-126)||(11488277-11488319)
chr2 (105-139)||(15377752-15377786)
chr2 (84-175)||(656805-656896)
chr2 (96-140)||(16353847-16353891)
chr2 (84-167)||(18962066-18962149)
chr2 (75-139)||(43205296-43205360)
[»] chr3 (8 HSPs)
chr3 (28-151)||(37273107-37273234)
chr3 (52-133)||(39602204-39602287)
chr3 (86-167)||(1125796-1125878)
chr3 (85-162)||(2201092-2201169)
chr3 (106-167)||(23530234-23530296)
chr3 (84-134)||(24158531-24158581)
chr3 (88-175)||(24887315-24887402)
chr3 (95-139)||(52618990-52619034)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 40335843 - 40335997
Alignment:
Q  28 ctgttcggtagagtttatggaaagagcttatgacatttcataagttgtttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataa 127  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||    
T  40335843 ctgtttggtagagtttatggaaagagcttgtgacttttcataagttgtttcagcaaatttccataagctttccaagatagcttatgaaagcagcttataa 40335942  T
Q  128 cttatatgaaaaacaatttgacttgttttatcttttgttaaagaaataacctacg 182  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||    
T  40335943 cttatatgaaaaacaatttggcttattttatcttttgtcaaagaaataacatacg 40335997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 40378347 - 40378459
Alignment:
Q  65 tcataagttgtttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttg 164  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||| |||||||||||||| |    
T  40378347 tcataagttgtttcaacaaatttccataatctctccaagttagtttatgatagcagcttataacttatatgaaatacagtttggcttgttttatctttcg 40378446  T
Q  165 ttaaagaaataac 177  Q
    ||||||| |||||    
T  40378447 ttaaagagataac 40378459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 40378614 - 40378664
Alignment:
Q  235 ttggacatataatgtcgtattttgttcttttgtttgtatcttgttcctttg 285  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  40378614 ttggacatataatgttgtattttgttcttttgtttgtatcttgttactttg 40378664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 12975387 - 12975326
Alignment:
Q  86 ttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttga 148  Q
    |||||||| ||||||||| |||||||||||  ||||||||| |||||||| ||||||||||||    
T  12975387 ttccataagctctccaagatagcttatgaacacagcttatagcttatatg-aaaacaatttga 12975326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 34117569 - 34117654
Alignment:
Q  89 cataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttgttaaagaaataac 177  Q
    ||||| ||||||||| ||||||||||||||| |||||| |||||||| |||  |   |  ||| |||||||||||||||||||||||||    
T  34117569 cataagctctccaagatagcttatgaaagcaacttatagcttatatgtaaataa---taccttattttatcttttgttaaagaaataac 34117654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 2568689 - 2568608
Alignment:
Q  95 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    ||||||| | |||||||||||| || |||||| |||||| |||||||||||| || ||||||||| | |||||| |||||||    
T  2568689 ctctccatgatagcttatgaaaacaacttatagcttatacgaaaaacaatttaactttgttttatatcttgttatagaaata 2568608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 14295537 - 14295457
Alignment:
Q  95 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    ||||||| | ||||||| |||| ||||||||| |||||||| |||||| |||||| || ||||||||||||||| |||||||    
T  14295537 ctctccaggatagcttacgaaaacagcttatagcttatatg-aaaacagtttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 36326041 - 36325986
Alignment:
Q  96 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 151  Q
    |||||||| ||||||| ||||||| |||||||||||||  |||||||| |||||||    
T  36326041 tctccaagatagcttacgaaagcaacttataacttatacaaaaaacaaattgactt 36325986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 30217124 - 30217082
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttata 126  Q
    |||||||||| ||||||| | ||||||||||||||||||||||    
T  30217124 atttccataagctctccaggatagcttatgaaagcagcttata 30217082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 7470592 - 7470636
Alignment:
Q  120 gcttataacttatatgaaaaacaatttgacttgttttatcttttgt 165  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||    
T  7470592 gcttataacttatatgaaaat-aatttgactttttttatcttttgt 7470636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 18875402 - 18875310
Alignment:
Q  85 tttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaataac 177  Q
    ||||||||| ||||||| | || ||||| ||| ||||||||||||| |||| ||| ||||||||| || |||| ||||||| || |||||||||    
T  18875402 tttccataagctctccaggatatcttattaaaacagcttataacttgtatg-aaatcaatttgactttattttgtcttttgatatagaaataac 18875310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 18902837 - 18902781
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaac 141  Q
    |||||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||    
T  18902837 atttccataagctccccaaaatagcttatgaa-gcagcttatagcttatatgaaaaac 18902781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 9202733 - 9202867
Alignment:
Q  44 atggaaagagcttatgacatt--tcataagttgtttcaa-caaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaa 140  Q
    ||||||| |||||||||||||  ||||||| |||||| | |  |||| |||||  ||| |||| || ||||||||| ||||||||  |||||||| ||||    
T  9202733 atggaaacagcttatgacattgttcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatg-aaaa 9202831  T
Q  141 caatttgac-ttgttttatcttttgttaaagaaata 175  Q
    |||||| || || |||||||||||| || |||||||    
T  9202832 caatttaactttattttatcttttgctacagaaata 9202867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 18704085 - 18704156
Alignment:
Q  105 tagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttgttaaagaaataac 177  Q
    |||||||||||| || |||||| ||||||| ||||| |  |||||||  |||||||||||||| |||||||||    
T  18704085 tagcttatgaaaacaacttatagcttatat-aaaaatagcttgactttatttatcttttgttatagaaataac 18704156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 18857439 - 18857494
Alignment:
Q  95 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 151  Q
    |||||||||  ||||||||||| |||||||||  ||||| |||||||||||||||||    
T  18857439 ctctccaagacagcttatgaaaacagcttatagattata-gaaaaacaatttgactt 18857494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 26390818 - 26390897
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttg 164  Q
    |||||||||| ||||||| | || |||| |||| || |||||| |||||||| |||||| ||| |||| ||||||||||||    
T  26390818 atttccataagctctccaggataacttaggaaaccatcttatagcttatatg-aaaacagtttaacttattttatcttttg 26390897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 41957430 - 41957534
Alignment:
Q  37 agagtttatggaaagagcttatgacatttc-ataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatat 134  Q
    |||| ||| ||||| |||||||||||| || ||||||||||| || |  |||| |||||  |||| | | |||||||||||| |||||||||||||| ||    
T  41957430 agagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataacttacat 41957529  T
Q  135 gaaaa 139  Q
    |||||    
T  41957530 gaaaa 41957534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 33787773 - 33787864
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    |||||||||| ||||||||| || ||||||||| |||||||||||||||||| ||| ||||||||| ||||||||| |||||||| |||||||    
T  33787773 atttccataagctctccaagataacttatgaaaacagcttataacttatatg-aaatcaatttgactttgttttatattttgttatagaaata 33787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 24838771 - 24838859
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaa 172  Q
    ||||| |||| ||||||| | |||||||||||| ||||||||| |||||||| |||| |||| | | |||||||||||||||||||||||    
T  24838771 atttctataagctctccatgatagcttatgaaatcagcttatagcttatatg-aaaataattagtctttgttttatcttttgttaaagaa 24838859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 24782101 - 24782010
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgttaaagaaata 175  Q
    |||| ||||| ||||| | | ||| |||| |||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||    
T  24782101 attttcataagctctcaaggatagtttattaaagtagcttataacttatatg-aaaacaatttgatttgattttatcttttgttatagaaata 24782010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 6647471 - 6647338
Alignment:
Q  44 atggaaagagcttatgacat-ttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaac 141  Q
    ||||||| |||||||||||| |||||||| ||||| ||||  |||| ||||| ||||| ||| |||||||||||| ||| ||||||| |||||  |||      
T  6647471 atggaaatagcttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagcttatgaaaacagattataacctatat-taaagt 6647373  T
Q  142 aatttgacttgttttatcttttgttaaagaaataac 177  Q
    |||||||||| | |||| |||||||| |||||||||    
T  6647372 aatttgactt-tattattttttgttatagaaataac 6647338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 4006735 - 4006665
Alignment:
Q  105 tagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    |||||||||||| || |||||| ||||||| |||||||||||||| || ||||||| ||||||| |||||||    
T  4006735 tagcttatgaaaacaacttatagcttatat-aaaaacaatttgactttattttatcatttgttatagaaata 4006665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 281876 - 281959
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 167  Q
    |||||||| | ||||| | | |||||||||||  ||||||||| |||||||| ||||||| ||||| || |||||||||||||||    
T  281876 atttccatgagctctctaggatagcttatgaacacagcttatagcttatatg-aaaacaagttgactttattttatcttttgtta 281959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 10154263 - 10154184
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatctttt 163  Q
    |||||||||| || | || | |||| |||||||| ||||||||||||||||| |||||| |||||| || |||||||||||    
T  10154263 atttccataagcttttcatgctagcctatgaaagtagcttataacttatatg-aaaacagtttgactttattttatctttt 10154184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 29274281 - 29274348
Alignment:
Q  108 cttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    ||||||||| ||| ||||| |||||||| ||||||||||||| || |||||||||||| || |||||||    
T  29274281 cttatgaaaacagtttatagcttatatg-aaaacaatttgactttattttatcttttgctatagaaata 29274348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 18628571 - 18628663
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgact-tgttttatcttttgttaaagaaataa 176  Q
    |||||||||| ||||||||| || ||||||||| ||| ||||||||||||| ||||||| ||||||| | ||||  ||||||||||||||||||    
T  18628571 atttccataagctctccaagataacttatgaaaacagtttataacttatat-aaaaacagtttgactatatttttccttttgttaaagaaataa 18628663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 30207599 - 30207691
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttgttaaagaaataac 177  Q
    |||||||||||||||| ||| |||||||||||| || |||||| |||||||| |||||| ||||| || |||||| |||||||| |||| ||||    
T  30207599 atttccataatctctctaaggtagcttatgaaaacaacttatagcttatatg-aaaacagtttgatttattttattttttgttatagaactaac 30207691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 2996604 - 2996532
Alignment:
Q  95 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgact-tgttttatcttttgtta 167  Q
    ||||||||| |||||||||||| || |||||||||||||| ||||||||||||||| | ||||||||| |||||    
T  2996604 ctctccaagatagcttatgaaaacaacttataacttatat-aaaaacaatttgactgtattttatcttatgtta 2996532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 17884131 - 17884019
Alignment:
Q  64 ttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatctt 161  Q
    |||||||||||||| || | ||||| ||||| ||||||||  |||||||||||| || || ||||||||||  ||||||||||| || || |||||||||    
T  17884131 ttcataagttgttttcagctaattttcataagctctccaatatagcttatgaaaacaactgataacttata-caaaaacaatttaactttattttatctt 17884033  T
Q  162 ttgttaaagaaata 175  Q
    |||||| |||||||    
T  17884032 ttgttatagaaata 17884019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 49219181 - 49219088
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaataac 177  Q
    |||||||||||||||  ||| ||| |||||||| || |||||| |||||||| |||| |||||||| || |||||| |||||||| |||||||||    
T  49219181 atttccataatctctttaagatagtttatgaaaacaacttatagcttatatg-aaaataatttgactttattttatattttgttatagaaataac 49219088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 23819189 - 23819076
Alignment:
Q  28 ctgttcggtagagtttatggaaagagcttatgacatttc-ataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttat 125  Q
    ||||| || |||||||| | ||| |||||||||||| || ||||||||||| || |  ||||| |||| |||| |||| |||||||||||| ||  ||||    
T  23819189 ctgtttggaagagtttaagaaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaacatgttat 23819090  T
Q  126 aacttatatgaaaa 139  Q
    ||||||||||||||    
T  23819089 aacttatatgaaaa 23819076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 34368872 - 34368828
Alignment:
Q  132 tatgaaaaacaatttgactt-gttttatcttttgttaaagaaata 175  Q
    |||||||||||||||||||| |||||||||||||||| |||||||    
T  34368872 tatgaaaaacaatttgactttgttttatcttttgttatagaaata 34368828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 52735164 - 52735073
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    |||||||||| |||| |||| ||||||| |||| || | ||||||||||||| |||  |||||||| || ||||||||||||||| |||||||    
T  52735164 atttccataagctcttcaagatagcttacgaaaacaacatataacttatatg-aaagtaatttgactttattttatcttttgttacagaaata 52735073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 10192315 - 10192243
Alignment:
Q  95 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 167  Q
    ||||||| | |||||| ||||| || ||||||||||||||| ||||||||||||| || || ||||||||||||    
T  10192315 ctctccaggatagcttttgaaaacaacttataacttatatg-aaaacaatttgactttattctatcttttgtta 10192243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 54325068 - 54325156
Alignment:
Q  87 tccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    ||||||| ||||||| | |||||| |||||  |||||||| |||||||| |||||| |||||| || ||||||||||||| | |||||||    
T  54325068 tccataaactctccatgatagcttttgaaaatagcttatagcttatatg-aaaacagtttgactttattttatcttttgtaatagaaata 54325156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 56480390 - 56480341
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttata 133  Q
    |||| ||||| ||||||||| ||| |||||||| ||||||||||||||||    
T  56480390 attttcataagctctccaagatagtttatgaaaacagcttataacttata 56480341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 1408327 - 1408379
Alignment:
Q  87 tccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    ||||||| ||||| ||||||||||||||||||| ||||||  ||||| |||||    
T  1408327 tccataaactctcgaagttagcttatgaaagcaacttatagattatacgaaaa 1408379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 3175972 - 3175913
Alignment:
Q  105 tagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttg 164  Q
    |||||||||||| ||||||||||||||  || ||||||||||||| || ||||||||||||    
T  3175972 tagcttatgaaaacagcttataacttacttg-aaaacaatttgactttattttatcttttg 3175913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 43824346 - 43824235
Alignment:
Q  64 ttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttt 162  Q
    |||||||||||||| || |  |||||||||| || |||| | || |||| ||||  ||||||||||||||||| |||| ||||||| ||   ||||||||    
T  43824346 ttcataagttgttttcagcttatttccataagctttccaggataacttacgaaaaaagcttataacttatatg-aaaagaatttgattttaattatcttt 43824248  T
Q  163 tgttaaagaaata 175  Q
    || ||||||||||    
T  43824247 tgctaaagaaata 43824235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 49086027 - 49085948
Alignment:
Q  88 ccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 167  Q
    |||||| ||||| ||| |||||||||||| || |||||||||| |||| |||| | |||||| || |||||||||||||||    
T  49086027 ccataagctctctaaggtagcttatgaaaacaacttataacttgtatg-aaaatagtttgacattattttatcttttgtta 49085948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 49517091 - 49517019
Alignment:
Q  105 tagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaataac 177  Q
    |||||||||||| ||||||||| |||| ||| ||||||||||||| || ||||||||||||||| |||||||||    
T  49517091 tagcttatgaaaacagcttatagcttaaatg-aaaacaatttgactttattttatcttttgttatagaaataac 49517019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 7472353 - 7472263
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatcttttgttaaagaaata 175  Q
    |||| ||||| ||||||||| ||||||||| || |||||||||  |||||  ||||||||||| |||| || |||||||||||| |||||||    
T  7472353 attttcataagctctccaagatagcttatggaaacagcttatagattatac-aaaaacaatttaacttattatatcttttgttatagaaata 7472263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 25006074 - 25006128
Alignment:
Q  96 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 151  Q
    |||||||| |||||||||||| || |||||| |||||||| |||||||||||||||    
T  25006074 tctccaagatagcttatgaaaacaacttatagcttatatg-aaaacaatttgactt 25006128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 6231863 - 6231921
Alignment:
Q  103 gttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttatctt 161  Q
    ||||||||| |||| |||||||||  |||||||||||||| ||||||||  ||||||||    
T  6231863 gttagcttacgaaaacagcttatagattatatgaaaaacagtttgactttatttatctt 6231921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 35590863 - 35590969
Alignment:
Q  28 ctgttcggtagagtttatggaaagagcttatgacatttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttata 126  Q
    ||||| ||||||| ||||||||| ||| |||| || ||||| |||||||| || |  |||||||||| ||||||| | |||||||||||| |  ||||||    
T  35590863 ctgtttggtagagcttatggaaacagcatatggcagttcatcagttgttttcagcttatttccataagctctccatgatagcttatgaaatcgacttata 35590962  T
Q  127 acttata 133  Q
     ||||||    
T  35590963 gcttata 35590969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 4548752 - 4548684
Alignment:
Q  95 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatctttt 163  Q
    ||||||||| |||||||||||| |||||||| |||| ||| ||||||| |||||| || |||||||||||    
T  4548752 ctctccaagatagcttatgaaaacagcttatgacttgtat-aaaaacagtttgactttattttatctttt 4548684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 4549561 - 4549625
Alignment:
Q  75 tttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||||||||| |||| ||||||| | | |||||||||| || |||||| ||| ||||||||    
T  4549561 tttcaacaaatttcaataagctctccaggattgcttatgaaaacatcttatagcttgtatgaaaa 4549625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 7273973 - 7274060
Alignment:
Q  90 ataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaataac 177  Q
    |||| |||| |||| ||| ||||| || ||||||||||||| |||| ||||||||||||| || ||| ||||||||||| | |||||||    
T  7273973 ataagctcttcaaggtagtttatggaaacagcttataacttgtatg-aaaacaatttgactttatttcatcttttgttataaaaataac 7274060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 30456478 - 30456569
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    |||| ||||| ||||||||| ||| |||||||| |  ||||||||||||||| ||||||||||||| || ||||||||||||||  |||||||    
T  30456478 attttcataagctctccaagatagtttatgaaaaccacttataacttatatg-aaaacaatttgactttattttatcttttgttttagaaata 30456569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 6263373 - 6263446
Alignment:
Q  66 cataagttgtttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||||||| | |  |||||||||  |||||||   |||||||||||| ||||||||||||||||||||||    
T  6263373 cataagttgttttagcttatttccatatgctctccataatagcttatgaaatcagcttataacttatatgaaaa 6263446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 28165142 - 28165044
Alignment:
Q  75 tttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgttaaagaaa 173  Q
    |||||||  |||||||||| ||||||| | |||||||| ||  ||| ||||| ||||||| |||| |||||||||||  ||||||||||||||| |||||    
T  28165142 tttcaacttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaa-caatttgacttcattttatcttttgttatagaaa 28165044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 38010756 - 38010674
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtt 166  Q
    ||||||||||  |||| | | ||| |||||||| ||||||||| |||||||| ||||||||||| | |||||||||||||||||    
T  38010756 atttccataagttctctaggatagattatgaaaacagcttatagcttatatg-aaaacaatttggctttgttttatcttttgtt 38010674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 18350740 - 18350790
Alignment:
Q  89 cataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    ||||| ||||||| | |||||||||||| |||||||||||||||| |||||    
T  18350740 cataagctctccatgatagcttatgaaaacagcttataacttatacgaaaa 18350790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 27548291 - 27548214
Alignment:
Q  98 tccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    |||||| |||||||||||| ||||||||| |||| ||| ||||||||| ||| || |||||||||||| ||| ||||||    
T  27548291 tccaagatagcttatgaaaacagcttatagcttaaatg-aaaacaattagactttattttatcttttgctaaggaaata 27548214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 44821980 - 44821935
Alignment:
Q  105 tagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 151  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  44821980 tagcttatgaaaacagcttataacttata-caaaaacaatttgactt 44821935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 1417295 - 1417223
Alignment:
Q  95 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 167  Q
    ||||||| | |||||||||||| || |||||  |||||||| ||||||||||||| || |||||||||||||||    
T  1417295 ctctccatgctagcttatgaaaacaacttattgcttatatg-aaaacaatttgactttattttatcttttgtta 1417223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 35536114 - 35536058
Alignment:
Q  119 agcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    ||||||||||||||||| ||||||||||||| || ||||||||| ||||| |||||||    
T  35536114 agcttataacttatatg-aaaacaatttgactttattttatcttatgttatagaaata 35536058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 22759228 - 22759145
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 167  Q
    |||||||||| ||||||  | |||||||||||| |||||| || |||||||| ||||||||||  | || |||||||||||||||    
T  22759228 atttccataagctctcctggatagcttatgaaatcagcttttagcttatatg-aaaacaattttcctttattttatcttttgtta 22759145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 27481322 - 27481413
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt-gttttatcttttgttaaagaaata 175  Q
    |||||||||| || |||| | ||||||||||||  | |||||| ||||||||  ||||| |||||||| |||||||| ||||||| |||||||    
T  27481322 atttccataagctatccatgatagcttatgaaaataacttatagcttatatg-gaaacagtttgacttcgttttatcctttgttatagaaata 27481413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 39591537 - 39591588
Alignment:
Q  126 aacttatatgaaaaacaatttgacttg-ttttatcttttgttaaagaaataac 177  Q
    |||||||||||||| |||||||||||  ||||||||||||||| |||||||||    
T  39591537 aacttatatgaaaa-caatttgactttattttatcttttgttatagaaataac 39591588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 47177666 - 47177587
Alignment:
Q  96 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    |||||||| |||||| ||||| ||||||||| |||||||| |||||||||| || ||||||| | ||||| || |||||||    
T  47177666 tctccaagatagcttttgaaaacagcttatagcttatatg-aaaacaatttaactttgttttgtattttgatatagaaata 47177587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 9836882 - 9836937
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||||| ||||||||| |||||||||||| ||| || |||||||||||||||    
T  9836882 atttccataagctctccaagatagcttatgaaaacaggttgtaacttatatgaaaa 9836937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 11795134 - 11795079
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||||| |||||||   |||||||||||| ||||||||||||||||||||||    
T  11795134 atttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaa 11795079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 8062371 - 8062322
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttata 133  Q
    |||||||||||||||| ||| |||||||||||| ||||||||| ||||||    
T  8062371 atttccataatctctctaagatagcttatgaaaacagcttatagcttata 8062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 8823427 - 8823511
Alignment:
Q  90 ataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaat 174  Q
    |||| ||| ||||| ||||||||||||| || |||||||||| || || |||||| |||| |||||||||||||||||| ||||||    
T  8823427 ataagctcgccaagatagcttatgaaagtagattataacttacat-aagaacaatctgactttgttttatcttttgttatagaaat 8823511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 4511047 - 4510988
Alignment:
Q  107 gcttatgaaagcagcttataacttatatgaaaaacaatttgacttgtttt-atcttttgtt 166  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||| |||| ||||||||||    
T  4511047 gcttatgaaaacagcttataacttatatgagaaa-aatttgactttttttaatcttttgtt 4510988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 6509331 - 6509397
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 151  Q
    ||||| |||| ||||||| | |||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  6509331 atttcaataagctctccaggatagcttatgaaaacagcttatagcttatat-aaatacaatttgactt 6509397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 11569436 - 11569527
Alignment:
Q  37 agagtttatggaaagagcttatgacattt-cataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttata 126  Q
    |||| ||||||||| |||||||||||| | |||||||||||| || |  |||| || |||||||||| | |||||||||||| |||||||||    
T  11569436 agagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 28769367 - 28769422
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||||| ||||||||  |||||||||||| ||||||||| |||||| |||||    
T  28769367 atttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaa 28769422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 12361210 - 12361141
Alignment:
Q  108 cttatgaaagcagcttataacttatatgaaaaacaatttgactt-gttttatcttttgttaaagaaataac 177  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||  ||||||||||  ||| |||||||||    
T  12361210 cttatgaaaacagcttatagcttatatg-aaaacaatttgacttcattttatctttatttatagaaataac 12361141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 8062566 - 8062495
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgtttt 156  Q
    |||| ||||| ||||| ||| |||||||||| | || |||||| |||||||| ||||||||||||||| ||||    
T  8062566 attttcataaactctctaagatagcttatgagaacatcttatagcttatatg-aaaacaatttgacttttttt 8062495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 31705127 - 31705047
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatctttt 163  Q
    |||||||||| ||||| | |  ||||||||||| ||||||||| |||||||||||   |||||||| || |||||||||||    
T  31705127 atttccataaactctcaaggacagcttatgaaaacagcttatagcttatatgaaacgtaatttgacatgattttatctttt 31705047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 34551162 - 34551079
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgtta 167  Q
    |||| ||||| ||||||| | || |||| |||| || ||||||||||| ||| |||||||||||||||| | |||||||||||||    
T  34551162 attttcataagctctccaggataacttaagaaaacaacttataacttaaatg-aaaacaatttgacttgatgttatcttttgtta 34551079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 41470344 - 41470388
Alignment:
Q  89 cataatctctccaagttagcttatgaaagcagcttataacttata 133  Q
    |||||||||| |||| |||||||||||| ||||||| ||||||||    
T  41470344 cataatctcttcaagatagcttatgaaaacagcttacaacttata 41470388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 10143211 - 10143121
Alignment:
Q  87 tccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgttaaagaaataac 177  Q
    ||||||| ||||||| | ||||||||||||  | |||||| ||||||| ||||||| ||||||||  ||||||||||||||| |||||||||    
T  10143211 tccataaactctccatgatagcttatgaaaaaaacttatagcttatat-aaaaacagtttgacttaattttatcttttgttatagaaataac 10143121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 35099618 - 35099682
Alignment:
Q  75 tttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||  |||||||||| ||||| | | ||||||||||||||||||||||||||  |||||||    
T  35099618 tttcaaccgatttccataagctctcaaggatagcttatgaaagcagcttataactttaatgaaaa 35099682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 11513928 - 11513858
Alignment:
Q  96 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtt 166  Q
    |||||| | |||||||||||| || |||||| |||||||| ||||||||||||| || ||||||||||||||    
T  11513928 tctccatgatagcttatgaaaacaacttatagcttatatg-aaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 18066158 - 18066115
Alignment:
Q  96 tctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||    
T  18066158 tctccaagatagcttatgaaaacagcttatagcttatatgaaaa 18066115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 18179280 - 18179323
Alignment:
Q  96 tctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||| | |||||||||||||||||||||| ||||||||||||    
T  18179280 tctccaggatagcttatgaaagcagcttatagcttatatgaaaa 18179323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 22681213 - 22681295
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtt 166  Q
    ||||||||||  |||| | | ||| |||||||| ||||||||| |||||||| ||||||||||| | |||||||||||||||||    
T  22681213 atttccataagttctctaggatagattatgaaaacagcttatagcttatatg-aaaacaatttggctttgttttatcttttgtt 22681295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 11488319 - 11488277
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttata 126  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  11488319 atttgcataatctctccaggatagcttatgaaagcagcttata 11488277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 15377786 - 15377752
Alignment:
Q  105 tagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||||||| ||||||||||||||||||||||    
T  15377786 tagcttatgaaaacagcttataacttatatgaaaa 15377752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 656805 - 656896
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgact-tgttttatcttttgttaaagaaata 175  Q
    |||| ||||| |||| |||| |||||||||||| || |||| | |||||| | |||||||||||| | | ||||||||||||||| |||||||    
T  656805 attttcataagctctgcaagatagcttatgaaatcaacttacagcttatacg-aaaacaatttgattatattttatcttttgttatagaaata 656896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 16353891 - 16353847
Alignment:
Q  96 tctccaagttagcttatgaaagcagcttataacttatatgaaaaa 140  Q
    |||||||| |||||||| ||| ||||||||| |||||||||||||    
T  16353891 tctccaagatagcttataaaaacagcttatagcttatatgaaaaa 16353847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 18962066 - 18962149
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 167  Q
    ||||||||| |||||||| | ||||||||||||  || ||||| |||||||| |||||| ||| || || |||||||||||||||    
T  18962066 atttccatagtctctccatgatagcttatgaaaatagtttatagcttatatg-aaaacagtttaactttattttatcttttgtta 18962149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 43205360 - 43205296
Alignment:
Q  75 tttcaacaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||||||  |||||||||| ||||||  | |||||||||||| ||| ||||| ||||||||||||    
T  43205360 tttcaacttatttccataagctctccgtgatagcttatgaaaacagattatatcttatatgaaaa 43205296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 37273234 - 37273107
Alignment:
Q  28 ctgttcggtagagtttatggaaagagcttatgacatttc-ataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcag---ct 122  Q
    ||||| || |||| ||||||||| | |||||||||| || ||||||||||| ||||  ||||||||||  |||||||| |||||||||||| |||    |    
T  37273234 ctgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacagtttat 37273135  T
Q  123 tataacttatatgaaaaacaatttgactt 151  Q
    |||| ||||||| ||||||||||||||||    
T  37273134 tatatcttatat-aaaaacaatttgactt 37273107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 39602204 - 39602287
Alignment:
Q  52 agcttatgacat-ttcataagttgttt-caacaaatttccataatctctccaagttagcttatgaaagcagcttataacttata 133  Q
    |||||||||||| ||||||| |||||| ||||  |||| |||||  |||| ||| |||||||||||| ||||||||||||||||    
T  39602204 agcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataacttata 39602287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 1125796 - 1125878
Alignment:
Q  86 ttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttatcttttgtta 167  Q
    |||||||| ||||||||| || |||| |||| ||  ||||| ||||||||||||||| ||||| ||| |||||||||| ||||    
T  1125796 ttccataagctctccaagataacttaagaaaacaagttatagcttatatgaaaaacagtttgaattgattttatctttagtta 1125878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 2201169 - 2201092
Alignment:
Q  85 tttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttt 162  Q
    ||||| ||| || |||||| ||||| |||||| ||||||||| |||||||| |||||| |||||| |||||||||||||    
T  2201169 tttccttaaactatccaagatagctaatgaaaacagcttatagcttatatg-aaaacagtttgactttgttttatcttt 2201092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 23530234 - 23530296
Alignment:
Q  106 agcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgtta 167  Q
    ||||||||||| || ||||||  |||||||||||| |||||||| || |||||||||||||||    
T  23530234 agcttatgaaaacaacttatactttatatgaaaaataatttgactttattttatcttttgtta 23530296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 24158531 - 24158581
Alignment:
Q  84 atttccataatctctccaagttagcttatgaaagcagcttataacttatat 134  Q
    |||||||||| ||||||| | |||||||||||| |||||||| ||||||||    
T  24158531 atttccataagctctccaggatagcttatgaaaacagcttattacttatat 24158581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 24887315 - 24887402
Alignment:
Q  88 ccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttatcttttgttaaagaaata 175  Q
    |||||| ||||||| | |||||||||||| |||||| || |||||||| || ||| |||||| || |||||||| |||||| |||||||    
T  24887315 ccataagctctccaggatagcttatgaaaacagcttttagcttatatg-aatacagtttgactttattttatctattgttatagaaata 24887402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 52619034 - 52618990
Alignment:
Q  95 ctctccaagttagcttatgaaagcagcttataacttatatgaaaa 139  Q
    |||| |||| |||||| ||||| ||||||||||||||||||||||    
T  52619034 ctcttcaagatagcttgtgaaaacagcttataacttatatgaaaa 52618990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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