View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10497_low_2 (Length: 498)
Name: NF10497_low_2
Description: NF10497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10497_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 5 - 480
Target Start/End: Complemental strand, 8154176 - 8153701
Alignment:
| Q |
5 |
aagtcaagagagcgtagagagcaacaacaaactaaaacatgaccacaagagacagagacgtcgatcatatatctatccaaaacatctctcgtatatcaaa |
104 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8154176 |
aagtcaagagagcgtggagagcaacaacaaactaaaacatgaccacaagagacagagacgtcgatcatatatctatccaaaacatctctcgtatatcaaa |
8154077 |
T |
|
| Q |
105 |
tatttagttcattcacggactaatactcacacttgaactcaacacatgaagtagatgtttctagatatgaggaaggtgaagaggaagtttgaagtgaagt |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8154076 |
tatttagttcattcatggactaatactcacacttgaactcaacacatgaagtagatgtttctagatatgaggaaggtgaagaggaagtttgaagtgaagt |
8153977 |
T |
|
| Q |
205 |
tgtgatgccggcgagcgatccgccacgccgtgccaacagattccacctttacaataagacatggtattgtgttgggaagtacgaggatgttggtcgacaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8153976 |
tgtgatgccggcgagcgatccgccacgccgtgccaacagattccacctttacaataagacatggtattgtgttgggaagtacgaggatgttggtcgacaa |
8153877 |
T |
|
| Q |
305 |
aaacacacttactaatcttccgagacaaatcccacattaaagttgccaccaaaatcaaagccaccaacgttgtagacacagtcacaacaaacacaccact |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8153876 |
aaacacacttactaatcttccgagacaaatcccacattaaagttgccaccaaaatcaaagccaccaacgttgtagacacagtcacaacaaacacaccact |
8153777 |
T |
|
| Q |
405 |
aaatcttcgtccatataaaacttcataagccttaacaaatgatgtaactgccacatagattattgtaagattactc |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8153776 |
aaatcttcgtccatataaaacttcataagccttaacaaatgatgtaactgccacatagattattgtaaggttactc |
8153701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University