View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10497_low_6 (Length: 266)
Name: NF10497_low_6
Description: NF10497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10497_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 8956811 - 8956557
Alignment:
| Q |
1 |
cagaattaagttcatatcctgcctgtgcaagcgaaaccaactgttcataacaaatcaaataatcaaaatcaagtttctagaaacagaatcgcaaaaactt |
100 |
Q |
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| T |
8956811 |
cagaattaagttcatatcctgcctgtgcaagcgaaaccaactgttcataacaaatcaaataatcaaaatcaagtttctagaaacagaatcgcaaaaactt |
8956712 |
T |
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| Q |
101 |
ggataaacataaatcgaaaacgtatagaacctgcatagcagtaacaaactctgaaaaacctaaaaatccttgacgtttgttatcagcaagagcccaaagc |
200 |
Q |
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| T |
8956711 |
ggataaacataaattgaaaacgtatagaacctgcatagcagtaacaaactctgaaaaacctaaaaatccttgacgtttgttatcagcaagagcccaaagc |
8956612 |
T |
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| Q |
201 |
tgcttgagttgagaacgagacaagttcgagagtgcgaagaattttgtagcttcat |
255 |
Q |
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| T |
8956611 |
tgcttgagttgagaacgagacaaattcgagagtgcgaagaattttgtagcttcat |
8956557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 55562077 - 55561996
Alignment:
| Q |
117 |
aaaacgtatagaacctgcatagcagtaacaaactctgaaaaacctaaaaatccttgacgtttgttatcagcaagagcccaaa |
198 |
Q |
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| T |
55562077 |
aaaatgtatataacctgcattgcagtaacaaactcttcaaaacctaaaaaaccttgtctcttggtatccgcaatagcccaaa |
55561996 |
T |
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