View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_high_1 (Length: 639)
Name: NF10498_high_1
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 54033068 - 54033460
Alignment:
| Q |
16 |
agatgaaccaactttttcacaatgaataaacaaagtgtacatacaatgtacacagctatttagattctagataaatttattgtcataaacaaagatgaaa |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54033068 |
agatgaaccaactttttcacaataaataaacaaagtgtacatacaatgtacacagctatttagattctagataaatttattgtcataaacaaagatgaaa |
54033167 |
T |
|
| Q |
116 |
agccttcagctgtatcatagctactattaataaattattaagtgacagcacacgagtaatnnnnnnnn--caattaaaaaggttaccaaaaagatgatct |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54033168 |
agccttcagctgtatcataactactattaataaattattaagtgacagcacacgagtaataaaaaaaaaacaattaaaaaggttaccaaaaagatgatct |
54033267 |
T |
|
| Q |
214 |
tcgagagatcccataggcatgtactcataaaccaaaagcctttgatctccatcagtgcaatagccaattaacttaaccagattagaatgatgtagcaagc |
313 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54033268 |
tcgagagatcccataggcatgtactcataaaccaaaagcctttgatctccatcagtgcagtagccaattaacttaaccagattagaatgatgtagcaagc |
54033367 |
T |
|
| Q |
314 |
ttaacataagaacctcagtcacaaattcctgaaaaccttgacgaccatcatgacttaattgtttcacagcaacaagctgcaaacattacaata |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54033368 |
ttaacataagaacctcagtcacaaattcctgaaaaccttgacgaccatcatgacttaattgtttcacagcaacaagctgcaaacattacaata |
54033460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 472 - 621
Target Start/End: Original strand, 54033526 - 54033675
Alignment:
| Q |
472 |
tacctcgccggtcgaaagacgacccttaaatacttttccaaaacctccttctccaatcaaattagcttccttaaaacccctggtcgctgtcgcaagctct |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54033526 |
tacctcgccggtcgaaagacgacccttaaatacttttccaaaacctccttctccaatcaaattagcttccttaaaacccctggtcgctgtcgcaagctct |
54033625 |
T |
|
| Q |
572 |
ctaaaaccaaaactagctgctgcagtactgcttttaccagtcctcacact |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54033626 |
ctaaaaccaaaactagctgctgcagtactgcttttaccagtcctcacact |
54033675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 190 - 396
Target Start/End: Original strand, 6157148 - 6157357
Alignment:
| Q |
190 |
aaaaggttaccaaaaagatgatcttcgagagatcccataggcatgtactcataaaccaaaagcctttgatctccatcagtgcaatagccaattaacttaa |
289 |
Q |
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|
||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
6157148 |
aaaagattaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatacttgtgcaatagccaattaacttaa |
6157247 |
T |
|
| Q |
290 |
ccag---attagaatgatgtagcaagcttaacataagaacctcagtcacaaattcctgaaaaccttgacgaccatcatgacttaattgtttcacagcaac |
386 |
Q |
| |
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| || ||| |||||| | | || || || |||||||||||| |||| |||||||||| ||||||||| ||||| | || |||| ||||||| ||||| |
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| T |
6157248 |
caagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaaccgtttcactgcaac |
6157347 |
T |
|
| Q |
387 |
aagctgcaaa |
396 |
Q |
| |
|
|||||||||| |
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|
| T |
6157348 |
aagctgcaaa |
6157357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 200 - 394
Target Start/End: Original strand, 56020917 - 56021111
Alignment:
| Q |
200 |
caaaaagatgatcttcgagagatcccataggcatgtactcataaaccaaaagcctttgatctccatcagtgcaatagccaattaacttaaccagattaga |
299 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
56020917 |
caaaaagatgagcttcaagagatcccttaggcatgtattcataaaccaaaagcatttgatctccattggtgcaataaccaattaacttaacaagattagc |
56021016 |
T |
|
| Q |
300 |
atgatgtagcaagcttaacataagaacctcagtcacaaattcctgaaaaccttgacgaccatcatgacttaattgtttcacagcaacaagctgca |
394 |
Q |
| |
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|||| | |||| |||| ||| || ||| |||| |||||| ||| | ||||||| ||||||| || |||| ||||| || ||||||||||||| |
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|
| T |
56021017 |
atgacgcagcacacttagaatatcaagctctgtcataaattcgtgacagccttgacaaccatcaggatttaactgttttactgcaacaagctgca |
56021111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 55063198 - 55063149
Alignment:
| Q |
219 |
agatcccataggcatgtactcataaaccaaaagcctttgatctccatcag |
268 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||| || ||||| |||| |
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| T |
55063198 |
agatcccaaaggcatgtactcgtaaaccaaaagcctctgctctccctcag |
55063149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 40933239 - 40933198
Alignment:
| Q |
219 |
agatcccataggcatgtactcataaaccaaaagcctttgatc |
260 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
40933239 |
agatcccaaaggcatgtactcataaaccaaaagcctttgatc |
40933198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 40923378 - 40923329
Alignment:
| Q |
219 |
agatcccataggcatgtactcataaaccaaaagcctttgatctccatcag |
268 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| || ||||| |||| |
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| T |
40923378 |
agatcccaaaggcatgtactcataaaccaaaagcctctgctctccctcag |
40923329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 40466608 - 40466660
Alignment:
| Q |
229 |
ggcatgtactcataaaccaaaagcctttgatctccatcagtgcaatagccaat |
281 |
Q |
| |
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||||| || |||||||| |||||||||||||||||||| | |||||| ||||| |
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| T |
40466608 |
ggcatatattcataaactaaaagcctttgatctccatcggcgcaataaccaat |
40466660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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