View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_high_11 (Length: 251)
Name: NF10498_high_11
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38595173 - 38595413
Alignment:
| Q |
1 |
ttttaatcgttacttcatccggttctatttatccgataaagttgaatcaagaaaagttaatgtatttaaattgaatttagaatcaaatacaccacttttt |
100 |
Q |
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| T |
38595173 |
ttttaatcgttacttcatccaattctatttatccgataaagttgagttaacaaaagttaatgtatttagattgaatttagaatcaaatacatcacttttt |
38595272 |
T |
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| Q |
101 |
attgatccaactannnnnnnnataaataggtcagaataaaatatatctgaaataacataattgaatttagagaaaattacattaacttccccacgcatac |
200 |
Q |
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| T |
38595273 |
attgatctaactattttttttataaataggtccgaataaaatatatctgaaataacataattgaatttagagaaaattacattaacttccccacgcatac |
38595372 |
T |
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| Q |
201 |
ccctctagtttgaaaaaagcactcatctagtctaccctatg |
241 |
Q |
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| T |
38595373 |
ccctctagtttgaaaaaagcactcatctagtctaccctatg |
38595413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 35585405 - 35585341
Alignment:
| Q |
42 |
ttgaatcaagaaaagttaatgtatttaaattgaatttagaatcaaatacaccactttttattgat |
106 |
Q |
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||||||||| ||||||||||||||||||| | || || ||||||||||| || ||||| ||||| |
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| T |
35585405 |
ttgaatcaacaaaagttaatgtatttaaactaaactttaaatcaaatacatcaatttttgttgat |
35585341 |
T |
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