View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_high_14 (Length: 250)

Name: NF10498_high_14
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_high_14
NF10498_high_14
[»] scaffold0009 (1 HSPs)
scaffold0009 (3-240)||(145765-145997)
[»] chr2 (13 HSPs)
chr2 (137-240)||(36700104-36700198)
chr2 (43-121)||(39715023-39715103)
chr2 (35-88)||(29503294-29503347)
chr2 (4-39)||(38465782-38465817)
chr2 (38-88)||(26482119-26482168)
chr2 (8-37)||(6074809-6074838)
chr2 (35-88)||(7799035-7799088)
chr2 (35-88)||(42327395-42327448)
chr2 (6-38)||(11093643-11093675)
chr2 (5-37)||(15119890-15119922)
chr2 (6-38)||(32316412-32316444)
chr2 (36-88)||(33962784-33962836)
chr2 (97-125)||(38854423-38854451)
[»] chr7 (20 HSPs)
chr7 (35-124)||(48771961-48772052)
chr7 (43-124)||(3174958-3175041)
chr7 (46-125)||(25132340-25132420)
chr7 (38-125)||(37473640-37473729)
chr7 (4-38)||(25245255-25245289)
chr7 (35-88)||(33460422-33460476)
chr7 (5-38)||(4407732-4407765)
chr7 (4-33)||(8127939-8127968)
chr7 (35-88)||(20335831-20335884)
chr7 (35-88)||(26459410-26459463)
chr7 (96-125)||(30579421-30579450)
chr7 (96-125)||(41487445-41487474)
chr7 (6-39)||(43103065-43103098)
chr7 (35-88)||(43215207-43215260)
chr7 (35-88)||(45229025-45229078)
chr7 (35-87)||(20952150-20952202)
chr7 (96-124)||(22932674-22932702)
chr7 (6-34)||(27389789-27389817)
chr7 (35-124)||(37085511-37085602)
chr7 (97-125)||(41519226-41519254)
[»] scaffold0258 (1 HSPs)
scaffold0258 (35-125)||(15284-15376)
[»] chr4 (20 HSPs)
chr4 (35-125)||(30938180-30938272)
chr4 (36-125)||(37720175-37720266)
chr4 (7-38)||(21224801-21224832)
chr4 (4-38)||(483973-484007)
chr4 (5-39)||(54164926-54164960)
chr4 (35-88)||(7949454-7949507)
chr4 (96-125)||(12793872-12793901)
chr4 (35-88)||(31759658-31759711)
chr4 (95-124)||(35818174-35818203)
chr4 (4-37)||(36786145-36786178)
chr4 (35-88)||(37109351-37109404)
chr4 (35-88)||(53496900-53496953)
chr4 (35-88)||(55427200-55427253)
chr4 (7-39)||(6126767-6126799)
chr4 (97-125)||(7949415-7949443)
chr4 (6-38)||(8826859-8826891)
chr4 (36-88)||(23377980-23378032)
chr4 (6-34)||(40575837-40575865)
chr4 (97-125)||(47386752-47386780)
chr4 (6-38)||(54713092-54713124)
[»] chr8 (14 HSPs)
chr8 (35-124)||(968385-968476)
chr8 (35-125)||(16852363-16852455)
chr8 (35-121)||(29858014-29858102)
chr8 (5-37)||(27518428-27518460)
chr8 (35-90)||(6436553-6436608)
chr8 (35-88)||(6536543-6536596)
chr8 (96-125)||(8485085-8485114)
chr8 (4-37)||(10934715-10934748)
chr8 (97-125)||(7347924-7347952)
chr8 (35-87)||(12281517-12281569)
chr8 (6-38)||(13496549-13496581)
chr8 (5-37)||(23627661-23627693)
chr8 (35-87)||(30774737-30774789)
chr8 (8-40)||(40640270-40640302)
[»] chr5 (12 HSPs)
chr5 (43-125)||(16773838-16773922)
chr5 (4-38)||(15549437-15549471)
chr5 (35-79)||(4793097-4793141)
chr5 (7-37)||(5360117-5360147)
chr5 (4-38)||(10437749-10437783)
chr5 (4-38)||(14772542-14772576)
chr5 (95-125)||(15486290-15486320)
chr5 (34-125)||(17028225-17028318)
chr5 (5-37)||(71254-71286)
chr5 (7-39)||(1899579-1899611)
chr5 (96-124)||(4793042-4793070)
chr5 (38-90)||(15485418-15485469)
[»] chr6 (12 HSPs)
chr6 (35-124)||(33549127-33549218)
chr6 (35-90)||(10338172-10338227)
chr6 (35-88)||(12216767-12216820)
chr6 (43-88)||(12234507-12234552)
chr6 (36-88)||(16405109-16405161)
chr6 (95-125)||(18562599-18562629)
chr6 (5-39)||(30397718-30397752)
chr6 (96-125)||(18263926-18263955)
chr6 (38-90)||(17149583-17149634)
chr6 (7-39)||(18097175-18097207)
chr6 (35-87)||(28363960-28364012)
chr6 (35-79)||(31623000-31623044)
[»] chr1 (11 HSPs)
chr1 (37-124)||(50901607-50901695)
chr1 (35-88)||(10526846-10526899)
chr1 (6-39)||(14214543-14214576)
chr1 (96-125)||(36124919-36124948)
chr1 (5-38)||(45115283-45115316)
chr1 (47-88)||(52029937-52029978)
chr1 (96-124)||(3799992-3800020)
chr1 (5-33)||(10832107-10832135)
chr1 (97-125)||(12587356-12587384)
chr1 (1-37)||(18353681-18353717)
chr1 (8-40)||(39216095-39216127)
[»] chr3 (15 HSPs)
chr3 (35-88)||(21960574-21960627)
chr3 (4-37)||(27224575-27224608)
chr3 (43-88)||(30510199-30510244)
chr3 (35-125)||(47454578-47454670)
chr3 (37-88)||(10445139-10445190)
chr3 (34-88)||(43902362-43902416)
chr3 (35-88)||(32651438-32651491)
chr3 (5-38)||(45736681-45736714)
chr3 (4-37)||(52215992-52216025)
chr3 (6-38)||(331912-331944)
chr3 (5-37)||(8504845-8504877)
chr3 (6-38)||(10872786-10872818)
chr3 (6-38)||(12708682-12708714)
chr3 (97-125)||(52769944-52769972)
chr3 (97-125)||(54990789-54990817)
[»] scaffold0299 (1 HSPs)
scaffold0299 (35-88)||(11551-11604)
[»] scaffold0047 (1 HSPs)
scaffold0047 (5-37)||(61275-61307)


Alignment Details
Target: scaffold0009 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 145997 - 145765
Alignment:
Q  3 atgatttttgtttataatagtgaccggagggtgtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgatt-cccaaacaccaatt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||    
T  145997 atgatttttgtttataatagtgaccggagggt-tattggtttgggacctaggagtgtgctccttctcgaggtctcagattcgattcccccagcaccaatt 145899  T
Q  102 taggtgggctaatttagcttcttcnnnnnnnnnnntatcggtattaatgtgtagtgtcaagtgtccgaactttatagatttatttgactgacatttcatt 201  Q
    |||||| ||||||||||||||              |||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  145898 taggtgagctaatttagcttc-----aaaaaaaaatatcggtattaatgagtagtgtctagtgtccgaacttcatagatttatttgactgacatttcatt 145804  T
Q  202 ttactatttatgcagctatacatctagggctaccctttg 240  Q
    | |||||||||||||||||||||||||||||||||||||    
T  145803 tcactatttatgcagctatacatctagggctaccctttg 145765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 36700198 - 36700104
Alignment:
Q  137 tatcggtattaatgtgtagtgtcaagtgtccgaactttatagatttatttgactgacatttcattttactatttatgcagctatacatctagggctaccc 236  Q
    |||||||||| |||||||||||| |||||||| |||| |||||||||||||||| ||||||||||| |         |||||||||||||||||||||||    
T  36700198 tatcggtattgatgtgtagtgtccagtgtccggacttgatagatttatttgactcacatttcatttca---------cagctatacatctagggctaccc 36700108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 39715023 - 39715103
Alignment:
Q  43 ttgggacctaggagtgtgctccatctcgaggtctcagattcgat--tcccaaacaccaatttaggtgggctaatttagctt 121  Q
    ||||||||| ||||||||||||  ||||||||||||| ||||||  |||| | ||||||||||||||||||||||||||||    
T  39715023 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccccagcaccaatttaggtgggctaatttagctt 39715103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 29503294 - 29503347
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||||||||||||| ||||||||||||  ||| ||||||||| ||||||||    
T  29503294 gtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattc 29503347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 38465817 - 38465782
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgtatt 39  Q
    ||||||||| ||||||||||||||||||||||||||    
T  38465817 tgatttttgcttataatagtgaccggagggtgtatt 38465782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 26482119 - 26482168
Alignment:
Q  38 ttggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    |||| |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  26482119 ttggcttgggacctaggagtgtgctcc-tctcaaggtctcaggttcgattc 26482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 6074838 - 6074809
Alignment:
Q  8 ttttgtttataatagtgaccggagggtgta 37  Q
    ||||||||||||||||||||||||||||||    
T  6074838 ttttgtttataatagtgaccggagggtgta 6074809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 7799088 - 7799035
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||| | ||||||||||||  |||||| |||||||||||||||    
T  7799088 gtattggcttgggacttgggagtgtgctcctcctcgagatctcagattcgattc 7799035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 42327448 - 42327395
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||| ||||||||||||  ||| ||||||||| ||||||||    
T  42327448 gtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattc 42327395  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 11093643 - 11093675
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtat 38  Q
    |||||||||||||| ||||||||||||||||||    
T  11093643 atttttgtttataaaagtgaccggagggtgtat 11093675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 15119890 - 15119922
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgta 37  Q
    |||||||| ||||||||||||||||||||||||    
T  15119890 gatttttgcttataatagtgaccggagggtgta 15119922  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 32316444 - 32316412
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||| |||||||||||||||||||||||||    
T  32316444 atttttgcttataatagtgaccggagggtgtat 32316412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 33962836 - 33962784
Alignment:
Q  36 tattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||||||||| || ||||||||||||  |||||| |||| ||||||||||    
T  33962836 tattggtttgggaactgggagtgtgctcctcctcgagatctcggattcgattc 33962784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 38854451 - 38854423
Alignment:
Q  97 caatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||    
T  38854451 caatttaggtgggctaatttagcttcttc 38854423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 48771961 - 48772052
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgatt--cccaaacaccaatttaggtgggctaatttagcttctt 124  Q
    ||||||| |||||| || ||||||||||||  || |||||||||| |||||||  |||||  ||||||||||||||||||||||||||||||    
T  48771961 gtattggcttgggatctgggagtgtgctcctccttgaggtctcaggttcgattatcccaagtaccaatttaggtgggctaatttagcttctt 48772052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 3174958 - 3175041
Alignment:
Q  43 ttgggacctaggagtgtgctccatctcgaggtctcagattcgattccca--aacaccaatttaggtgggctaatttagcttctt 124  Q
    |||||| || ||||||||||||||||||||||||||| |||||||| |   || | |||||||| |||| ||||||||||||||    
T  3174958 ttgggatctgggagtgtgctccatctcgaggtctcaggttcgattctctccaatatcaatttagttgggttaatttagcttctt 3175041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 25132420 - 25132340
Alignment:
Q  46 ggacctaggagtgtgctccatctcgaggtctcagattcgattc-ccaaacaccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||||||||||||| |||  ||||||||| |||||||| || ||  | ||||| ||||||||||||||||||||||    
T  25132420 ggacctaggagtgtgctccttcttaaggtctcaggttcgattctcccaatgctaatttgggtgggctaatttagcttcttc 25132340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 37473640 - 37473729
Alignment:
Q  38 ttggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc--ccaaacaccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||||| |||||||| ||||||  || |||||||||| ||||||||  || ||   ||||||||||||| |||||||||||||||    
T  37473640 ttggtttgggatctaggagtttgctcctccttgaggtctcaggttcgattctccctaatgtcaatttaggtgggttaatttagcttcttc 37473729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 25245255 - 25245289
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||||| |||||||||||||||||||||||||    
T  25245255 tgatttttgcttataatagtgaccggagggtgtat 25245289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 33460476 - 33460422
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatc-tcgaggtctcagattcgattc 88  Q
    |||||||||||||||||||||||||| |||  | || ||||||||||||||||||    
T  33460476 gtattggtttgggacctaggagtgtggtcctccttcaaggtctcagattcgattc 33460422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 4407732 - 4407765
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgtat 38  Q
    |||||||||||||| |||||||||||||||||||    
T  4407732 gatttttgtttatattagtgaccggagggtgtat 4407765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 8127939 - 8127968
Alignment:
Q  4 tgatttttgtttataatagtgaccggaggg 33  Q
    ||||||||||||||||||||||||||||||    
T  8127939 tgatttttgtttataatagtgaccggaggg 8127968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 20335884 - 20335831
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||| | ||||||||||||  ||||||||||||| ||||||||    
T  20335884 gtattggcttgggacttgggagtgtgctcctcctcgaggtctcaggttcgattc 20335831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 26459463 - 26459410
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||| ||||||||||||  ||| ||||||||| ||||||||    
T  26459463 gtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattc 26459410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 30579421 - 30579450
Alignment:
Q  96 ccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||||||||||||||||||||||||    
T  30579421 ccaatttaggtgggctaatttagcttcttc 30579450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 41487445 - 41487474
Alignment:
Q  96 ccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||||||||||||||||||||||||    
T  41487445 ccaatttaggtgggctaatttagcttcttc 41487474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 43103098 - 43103065
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtatt 39  Q
    ||||||| ||||||||||||||||||||||||||    
T  43103098 atttttgcttataatagtgaccggagggtgtatt 43103065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 43215207 - 43215260
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||| ||||||||||||  ||| ||||||||| ||||||||    
T  43215207 gtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattc 43215260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 45229078 - 45229025
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    |||||||||||||||||||||||||||| | ||| ||||| | || ||||||||    
T  45229078 gtattggtttgggacctaggagtgtgcttcttcttgaggttttaggttcgattc 45229025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 20952202 - 20952150
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgatt 87  Q
    ||||||||||||||||| ||||||||||||  ||| |  ||||||||||||||    
T  20952202 gtattggtttgggacctgggagtgtgctcctcctcaaaatctcagattcgatt 20952150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 22932702 - 22932674
Alignment:
Q  96 ccaatttaggtgggctaatttagcttctt 124  Q
    |||||||||||||||||||||||||||||    
T  22932702 ccaatttaggtgggctaatttagcttctt 22932674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 27389789 - 27389817
Alignment:
Q  6 atttttgtttataatagtgaccggagggt 34  Q
    |||||||||||||||||||||||||||||    
T  27389789 atttttgtttataatagtgaccggagggt 27389817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 37085602 - 37085511
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc--ccaaacaccaatttaggtgggctaatttagcttctt 124  Q
    ||||||| ||||||  | |||||||||||   |||||||| |||| ||||||||  || || ||||||||| ||||||||||||| ||||||    
T  37085602 gtattggcttgggatttgggagtgtgctcatcctcgaggtttcaggttcgattctccccaataccaatttaagtgggctaatttaacttctt 37085511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 41519254 - 41519226
Alignment:
Q  97 caatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||    
T  41519254 caatttaggtgggctaatttagcttcttc 41519226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 15376 - 15284
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgat--tcccaaacaccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||| ||||||  || |  |  ||||||||||||||||||||||||||||||    
T  15376 gtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttcttc 15284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 30938272 - 30938180
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgat--tcccaaacaccaatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||| || ||||||||||||  ||||||||||||| ||||||  |||| ||  |||||||||||||| || ||||||||||||    
T  30938272 gtattggtttgggatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 30938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 37720266 - 37720175
Alignment:
Q  36 tattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc--ccaaacaccaatttaggtgggctaatttagcttcttc 125  Q
    |||||| ||||||||| ||||||||| ||  ||| ||||| ||| ||||||||  |||   | |||||||||||||||||||||||||||||    
T  37720266 tattggcttgggacctgggagtgtgcccctcctcaaggtcccaggttcgattctcccagggatcaatttaggtgggctaatttagcttcttc 37720175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 21224801 - 21224832
Alignment:
Q  7 tttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||||||||||||||||||||||||||||    
T  21224801 tttttgtttataatagtgaccggagggtgtat 21224832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 484007 - 483973
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgtat 38  Q
    |||||||||||||||||| ||||||||||||||||    
T  484007 tgatttttgtttataataatgaccggagggtgtat 483973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 54164926 - 54164960
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgtatt 39  Q
    |||||||| ||||||||||||||||||||||||||    
T  54164926 gatttttgcttataatagtgaccggagggtgtatt 54164960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 7949507 - 7949454
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||| ||||||||||||  ||| ||||||||| ||||||||    
T  7949507 gtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattc 7949454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 12793901 - 12793872
Alignment:
Q  96 ccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||||||||||||||||||||||||    
T  12793901 ccaatttaggtgggctaatttagcttcttc 12793872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 31759711 - 31759658
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||| | ||||||||||||  ||| ||||||||||||||||||    
T  31759711 gtattggcttgggacttgggagtgtgctcctcctcaaggtctcagattcgattc 31759658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 124
Target Start/End: Original strand, 35818174 - 35818203
Alignment:
Q  95 accaatttaggtgggctaatttagcttctt 124  Q
    ||||||||||||||||||||||||||||||    
T  35818174 accaatttaggtgggctaatttagcttctt 35818203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 36786178 - 36786145
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgta 37  Q
    ||||||||||||||||||| ||||||||||||||    
T  36786178 tgatttttgtttataatagggaccggagggtgta 36786145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 37109404 - 37109351
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||| ||||||||||||  ||| ||||||||| ||||||||    
T  37109404 gtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattc 37109351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 53496900 - 53496953
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||||||||||||| ||||||||||||  ||| | |||||||||| |||||    
T  53496900 gtattggtttgggacctgggagtgtgctcctcctcaaagtctcagatttgattc 53496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 55427253 - 55427200
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||| ||||| ||||||  ||||||||||||| ||||||||    
T  55427253 gtattggcttgggacctgggagtctgctcctgctcgaggtctcaggttcgattc 55427200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 6126767 - 6126799
Alignment:
Q  7 tttttgtttataatagtgaccggagggtgtatt 39  Q
    |||||| ||||||||||||||||||||||||||    
T  6126767 tttttgcttataatagtgaccggagggtgtatt 6126799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 7949443 - 7949415
Alignment:
Q  97 caatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||    
T  7949443 caatttaggtgggctaatttagcttcttc 7949415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 8826891 - 8826859
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||||||||||||||||||||| |||||||    
T  8826891 atttttgtttataatagtgaccggaaggtgtat 8826859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 23377980 - 23378032
Alignment:
Q  36 tattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    |||||| ||||||||| ||||||||||||  ||| ||||||||| ||||||||    
T  23377980 tattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattc 23378032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 40575865 - 40575837
Alignment:
Q  6 atttttgtttataatagtgaccggagggt 34  Q
    |||||||||||||||||||||||||||||    
T  40575865 atttttgtttataatagtgaccggagggt 40575837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 47386780 - 47386752
Alignment:
Q  97 caatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||    
T  47386780 caatttaggtgggctaatttagcttcttc 47386752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 54713124 - 54713092
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||| |||||||||||||||||||||||||    
T  54713124 atttttgcttataatagtgaccggagggtgtat 54713092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 968385 - 968476
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgat--tcccaaacaccaatttaggtgggctaatttagcttctt 124  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||| ||||||  || |  |  |||||||||||||||||||||||||||||    
T  968385 gtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 16852363 - 16852455
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgat--tcccaaacaccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||| ||||||  |||  |   ||||||||||||||||| ||||||||||||    
T  16852363 gtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtgggctattttagcttcttc 16852455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 29858102 - 29858014
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattccc--aaacaccaatttaggtgggctaatttagctt 121  Q
    ||||||| ||||||||  ||||||||||||  ||||||||||||| ||||||||||       ||||||||||||||||||||||||||    
T  29858102 gtattggcttgggaccagggagtgtgctcctcctcgaggtctcaggttcgattcccctcggtgccaatttaggtgggctaatttagctt 29858014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 27518428 - 27518460
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgta 37  Q
    |||||||||||||||||||||||||||||||||    
T  27518428 gatttttgtttataatagtgaccggagggtgta 27518460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 6436608 - 6436553
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattccc 90  Q
    ||||||| ||||||| ||||||||||||||  | | ||||||||||||||||||||    
T  6436608 gtattggcttgggacttaggagtgtgctcctccgcaaggtctcagattcgattccc 6436553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 6536543 - 6536596
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||||||||||||||||  ||| ||||||||| ||| ||||    
T  6536543 gtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcaattc 6536596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 8485085 - 8485114
Alignment:
Q  96 ccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||||||||||||||||||||||||    
T  8485085 ccaatttaggtgggctaatttagcttcttc 8485114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 10934715 - 10934748
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgta 37  Q
    ||||||||| ||||||||||||||||||||||||    
T  10934715 tgatttttgcttataatagtgaccggagggtgta 10934748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 7347924 - 7347952
Alignment:
Q  97 caatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||    
T  7347924 caatttaggtgggctaatttagcttcttc 7347952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 12281517 - 12281569
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgatt 87  Q
    ||||||| |||||||||  |||||||| ||  |||||||||||||||||||||    
T  12281517 gtattggcttgggacctgagagtgtgcccctcctcgaggtctcagattcgatt 12281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 13496549 - 13496581
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||| |||||||||||||||||||||||||    
T  13496549 atttttgcttataatagtgaccggagggtgtat 13496581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 23627693 - 23627661
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgta 37  Q
    |||||||| ||||||||||||||||||||||||    
T  23627693 gatttttgcttataatagtgaccggagggtgta 23627661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 30774789 - 30774737
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgatt 87  Q
    |||||||||||||| || | |||||| |||  |||||||||||||||||||||    
T  30774789 gtattggtttgggatctggaagtgtgttcctcctcgaggtctcagattcgatt 30774737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 40640302 - 40640270
Alignment:
Q  8 ttttgtttataatagtgaccggagggtgtattg 40  Q
    ||||| |||||||||||||||||||||||||||    
T  40640302 ttttgcttataatagtgaccggagggtgtattg 40640270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 16773838 - 16773922
Alignment:
Q  43 ttgggacctaggagtgtgctccatctcgaggtctcagattcgat--tcccaaacaccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||| ||||||||||||  ||||||||||||| ||||||  || |  |  ||||||||||||||||||||||||||||||    
T  16773838 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagcttcttc 16773922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 15549437 - 15549471
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgtat 38  Q
    |||||||||||||||||||||||||||||||||||    
T  15549437 tgatttttgtttataatagtgaccggagggtgtat 15549471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 4793141 - 4793097
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcag 79  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||    
T  4793141 gtattggtttgggacctgggagtgtgctcctcctcgaggtctcag 4793097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 5360147 - 5360117
Alignment:
Q  7 tttttgtttataatagtgaccggagggtgta 37  Q
    |||||||||||||||||||||||||||||||    
T  5360147 tttttgtttataatagtgaccggagggtgta 5360117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 10437749 - 10437783
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||||| |||||||||||||||||||||||||    
T  10437749 tgatttttgcttataatagtgaccggagggtgtat 10437783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 14772576 - 14772542
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||||| |||||||||||||||||||||||||    
T  14772576 tgatttttgcttataatagtgaccggagggtgtat 14772542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Original strand, 15486290 - 15486320
Alignment:
Q  95 accaatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||||    
T  15486290 accaatttaggtgggctaatttagcttcttc 15486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 17028318 - 17028225
Alignment:
Q  34 tgtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattccca--aacaccaatttaggtgggctaatttagcttcttc 125  Q
    |||||||| ||||||| | ||||||||||||  ||| ||||||||| || |||||||   |    |||||||||||||||||||||||||||||    
T  17028318 tgtattgggttgggacttgggagtgtgctcctcctcaaggtctcaggtttgattccctctagtgtcaatttaggtgggctaatttagcttcttc 17028225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 71286 - 71254
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgta 37  Q
    |||||||| ||||||||||||||||||||||||    
T  71286 gatttttgcttataatagtgaccggagggtgta 71254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 1899579 - 1899611
Alignment:
Q  7 tttttgtttataatagtgaccggagggtgtatt 39  Q
    ||||||||||||||||| |||||||||||||||    
T  1899579 tttttgtttataatagtaaccggagggtgtatt 1899611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 4793070 - 4793042
Alignment:
Q  96 ccaatttaggtgggctaatttagcttctt 124  Q
    |||||||||||||||||||||||||||||    
T  4793070 ccaatttaggtgggctaatttagcttctt 4793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 15485469 - 15485418
Alignment:
Q  38 ttggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattccc 90  Q
    |||| ||||||||| |||||||||||| |||| ||||||||| ||||||||||    
T  15485469 ttggcttgggaccttggagtgtgctcc-tctcaaggtctcaggttcgattccc 15485418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 33549127 - 33549218
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgat--tcccaaacaccaatttaggtgggctaatttagcttctt 124  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||| ||||||  || |  |  |||||||||||| ||||||||||||||||    
T  33549127 gtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgagctaatttagcttctt 33549218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 10338227 - 10338172
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattccc 90  Q
    ||||||| ||||||||||||||||||||||  ||| ||||||||| ||||||||||    
T  10338227 gtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcgattccc 10338172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 12216767 - 12216820
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    |||||||||||||||||  || |||||||| |||||||||||||| ||||||||    
T  12216767 gtattggtttgggacctgcgaatgtgctccttctcgaggtctcaggttcgattc 12216820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 12234552 - 12234507
Alignment:
Q  43 ttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||    
T  12234552 ttgggacctgggagtgtgctccctctcgaggtctcaggttcgattc 12234507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 16405109 - 16405161
Alignment:
Q  36 tattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    |||||||||||||||| |||||||||| |  ||||||||||||| ||||||||    
T  16405109 tattggtttgggacctgggagtgtgcttctcctcgaggtctcagtttcgattc 16405161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 18562629 - 18562599
Alignment:
Q  95 accaatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||||    
T  18562629 accaatttaggtgggctaatttagcttcttc 18562599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 30397752 - 30397718
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgtatt 39  Q
    |||||||||||||| ||||||||||||||||||||    
T  30397752 gatttttgtttatattagtgaccggagggtgtatt 30397718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 18263926 - 18263955
Alignment:
Q  96 ccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||||||||||||||||||||||||    
T  18263926 ccaatttaggtgggctaatttagcttcttc 18263955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 17149634 - 17149583
Alignment:
Q  38 ttggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattccc 90  Q
    ||||||||||| || |||||||||||| |||| ||||||||| ||||||||||    
T  17149634 ttggtttgggatcttggagtgtgctcc-tctcaaggtctcaggttcgattccc 17149583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 18097175 - 18097207
Alignment:
Q  7 tttttgtttataatagtgaccggagggtgtatt 39  Q
    |||||||||||| ||||||||||||||||||||    
T  18097175 tttttgtttatattagtgaccggagggtgtatt 18097207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 28363960 - 28364012
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgatt 87  Q
    |||||||||||||| ||  |||||||||||  ||| |||||||||||||||||    
T  28363960 gtattggtttgggatctgcgagtgtgctcctcctcaaggtctcagattcgatt 28364012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 31623044 - 31623000
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcag 79  Q
    ||||||| ||||||||| ||||||||||||  |||||||||||||    
T  31623044 gtattggcttgggacctgggagtgtgctcctcctcgaggtctcag 31623000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 50901607 - 50901695
Alignment:
Q  37 attggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattcccaaaca-ccaatttaggtgggctaatttagcttctt 124  Q
    ||||| ||||||||| | ||||||||||  |||||||||||| ||||||||| |  |   |||||||||||||||||||||||||||||    
T  50901607 attggcttgggacctggtagtgtgctcctcctcgaggtctcaaattcgattctctcagtgccaatttaggtgggctaatttagcttctt 50901695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 10526846 - 10526899
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||| ||||| ||||||  ||| ||||||||||||||||||    
T  10526846 gtattggcttgggacctgggagtttgctcctcctcaaggtctcagattcgattc 10526899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 14214576 - 14214543
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtatt 39  Q
    ||||||| ||||||||||||||||||||||||||    
T  14214576 atttttgcttataatagtgaccggagggtgtatt 14214543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 36124919 - 36124948
Alignment:
Q  96 ccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||||||||||||||||||||||||||    
T  36124919 ccaatttaggtgggctaatttagcttcttc 36124948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 45115283 - 45115316
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgtat 38  Q
    |||||||| |||||||||||||||||||||||||    
T  45115283 gatttttgcttataatagtgaccggagggtgtat 45115316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 52029978 - 52029937
Alignment:
Q  47 gacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    |||||||||||||||||| |||| ||||||||| ||||||||    
T  52029978 gacctaggagtgtgctccttctcaaggtctcaggttcgattc 52029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 3799992 - 3800020
Alignment:
Q  96 ccaatttaggtgggctaatttagcttctt 124  Q
    |||||||||||||||||||||||||||||    
T  3799992 ccaatttaggtgggctaatttagcttctt 3800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 10832107 - 10832135
Alignment:
Q  5 gatttttgtttataatagtgaccggaggg 33  Q
    |||||||||||||||||||||||||||||    
T  10832107 gatttttgtttataatagtgaccggaggg 10832135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 12587356 - 12587384
Alignment:
Q  97 caatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||    
T  12587356 caatttaggtgggctaatttagcttcttc 12587384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18353681 - 18353717
Alignment:
Q  1 ttatgatttttgtttataatagtgaccggagggtgta 37  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  18353681 ttatgatttttgcttataatagtgaccggatggtgta 18353717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 39216127 - 39216095
Alignment:
Q  8 ttttgtttataatagtgaccggagggtgtattg 40  Q
    ||||| |||||||||||||||||||||||||||    
T  39216127 ttttgcttataatagtgaccggagggtgtattg 39216095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 21960574 - 21960627
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| |||||||||  |||||||||||  ||||||||||||||||||||||    
T  21960574 gtattggcttgggacctgagagtgtgctcctcctcgaggtctcagattcgattc 21960627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 27224608 - 27224575
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgta 37  Q
    ||||||||||||||||||||||||||||||||||    
T  27224608 tgatttttgtttataatagtgaccggagggtgta 27224575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 30510244 - 30510199
Alignment:
Q  43 ttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||||    
T  30510244 ttgggacctaggagtatgctccttctcgaggtctcaggttcgattc 30510199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 47454670 - 47454578
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgat--tcccaaacaccaatttaggtgggctaatttagcttcttc 125  Q
    ||||||| ||| || || ||||||||||||  ||||||||||||| ||||||  |||| ||  |||||||||||||| || ||||||||||||    
T  47454670 gtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 47454578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 10445190 - 10445139
Alignment:
Q  37 attggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||| ||||||||| ||||||||||||  ||||||||||||| ||||||||    
T  10445190 attggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattc 10445139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 43902416 - 43902362
Alignment:
Q  34 tgtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    |||||||| ||| |||||||||||| ||| |  ||||||||||||||||||||||    
T  43902416 tgtattggcttgtgacctaggagtgcgcttctcctcgaggtctcagattcgattc 43902362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 32651491 - 32651438
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| ||||||||| ||||||||||||  ||| || |||||||||||||||    
T  32651491 gtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattc 32651438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 45736714 - 45736681
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgtat 38  Q
    |||||||| |||||||||||||||||||||||||    
T  45736714 gatttttgcttataatagtgaccggagggtgtat 45736681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 52215992 - 52216025
Alignment:
Q  4 tgatttttgtttataatagtgaccggagggtgta 37  Q
    ||||||||| ||||||||||||||||||||||||    
T  52215992 tgatttttgcttataatagtgaccggagggtgta 52216025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 331912 - 331944
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||| |||||||||||||||||||||||||    
T  331912 atttttgcttataatagtgaccggagggtgtat 331944  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 8504877 - 8504845
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgta 37  Q
    |||||||| ||||||||||||||||||||||||    
T  8504877 gatttttgcttataatagtgaccggagggtgta 8504845  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 10872786 - 10872818
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||| |||||||||||||||||||||||||    
T  10872786 atttttgcttataatagtgaccggagggtgtat 10872818  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 12708714 - 12708682
Alignment:
Q  6 atttttgtttataatagtgaccggagggtgtat 38  Q
    ||||||| |||||||||||||||||||||||||    
T  12708714 atttttgcttataatagtgaccggagggtgtat 12708682  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 52769972 - 52769944
Alignment:
Q  97 caatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||    
T  52769972 caatttaggtgggctaatttagcttcttc 52769944  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 54990789 - 54990817
Alignment:
Q  97 caatttaggtgggctaatttagcttcttc 125  Q
    |||||||||||||||||||||||||||||    
T  54990789 caatttaggtgggctaatttagcttcttc 54990817  T

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Target: scaffold0299 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 11551 - 11604
Alignment:
Q  35 gtattggtttgggacctaggagtgtgctccatctcgaggtctcagattcgattc 88  Q
    ||||||| |||||| || ||||||||||||  ||||||||||||| ||||||||    
T  11551 gtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattc 11604  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 61275 - 61307
Alignment:
Q  5 gatttttgtttataatagtgaccggagggtgta 37  Q
    |||||||||||||| ||||||||||||||||||    
T  61275 gatttttgtttatattagtgaccggagggtgta 61307  T

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