View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_high_2 (Length: 542)
Name: NF10498_high_2
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Original strand, 39000080 - 39000609
Alignment:
| Q |
17 |
agaatggagcatgaaaatgaatagagaaagagcatgatgatgtacatgtttgtttgggtgccacttttcttttggttgctactctttcattgagtaaatc |
116 |
Q |
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| T |
39000080 |
agaatggagcatgaaaatgaatagagaaagagcatgatgatgtacatgtttgtttgggtgccacttttcttttggttgctactctttcattgagtaaatc |
39000179 |
T |
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| Q |
117 |
acaattttggt--------gtgtgatactatatcaatatagtctttgaatatatcaaaataactaaaatgttactgaatatatcttttattagtaatttt |
208 |
Q |
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| T |
39000180 |
ataattttggttacaaaacgtgtgatactatatcaatatagtctttgaatatatcaaaataactaaaatattactgaatatatcttttgttagtaatttt |
39000279 |
T |
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| Q |
209 |
attcatcaaactaacttaaaagaagatacgtctaataaccaaactaatcgataaaagatatatacgagaaccaaattgaataacaaatgagaaattttga |
308 |
Q |
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| T |
39000280 |
attcatcaaactaacttaaaagaagatacgtctaataaccaaactaatcgataaaagacatc--cgagaaccaaattgattaacaaatgagaaatttcaa |
39000377 |
T |
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| Q |
309 |
tgtatgtttttgtaattttcgtatatttatggactaaatgacaaggactcacaaaaattactatttacacttctttctttggtgttttg-----ctttgc |
403 |
Q |
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| T |
39000378 |
tgtatgtttttgtaattttcgtatattcatggactaaatgacaagaactcacaaaaattactatttacacttctttctttcgtgttttgctttgctttgc |
39000477 |
T |
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| Q |
404 |
ttgataatgcagcttccgtatttagtgcataatttcctccactcatagtattggtgttggaggacccacttgccactatcttcattatcactcattccac |
503 |
Q |
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| T |
39000478 |
ttgataatgcagcttccgtatttagtgcataatttcctccactcatagtattggtgttggaggacccacttgccactatcttcattatcactcattccac |
39000577 |
T |
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| Q |
504 |
tcaatctttcaatagataccatccctttgctt |
535 |
Q |
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| T |
39000578 |
tcaatctttcaatagataccatccctatgctt |
39000609 |
T |
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