View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_high_27 (Length: 220)

Name: NF10498_high_27
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_high_27
NF10498_high_27
[»] chr3 (2 HSPs)
chr3 (16-209)||(12735517-12735710)
chr3 (112-209)||(32579655-32579752)
[»] scaffold0464 (1 HSPs)
scaffold0464 (22-209)||(7220-7407)
[»] chr7 (7 HSPs)
chr7 (112-209)||(19778782-19778879)
chr7 (112-209)||(19888504-19888601)
chr7 (112-209)||(19351793-19351890)
chr7 (136-209)||(19357108-19357181)
chr7 (165-209)||(19598578-19598622)
chr7 (168-203)||(19721240-19721275)
chr7 (172-209)||(19879702-19879739)
[»] chr6 (1 HSPs)
chr6 (128-209)||(14748577-14748657)
[»] chr2 (4 HSPs)
chr2 (114-203)||(18921488-18921574)
chr2 (115-203)||(18909593-18909678)
chr2 (117-203)||(18914343-18914426)
chr2 (168-208)||(20578964-20579004)
[»] chr8 (1 HSPs)
chr8 (168-210)||(42693664-42693706)
[»] chr1 (3 HSPs)
chr1 (169-210)||(42414163-42414204)
chr1 (168-209)||(43907684-43907725)
chr1 (169-210)||(43986909-43986950)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 12735517 - 12735710
Alignment:
Q  16 atgaaggacggactctccagcaaacgacttactggaatgggtatgagactgtaatcaaagttgcccttgtctggtactcggaatgatctaagcaaaaggt 115  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  12735517 atgaaggacggactctccagcaaacgacttacaggaatggatatgagactgtaatcaaagttgccccagtctggtactcggaatgatcttagcaaaaggt 12735616  T
Q  116 gggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12735617 gggtgttccgaggcgatcgccgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcaaacacatttgaattg 12735710  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 32579655 - 32579752
Alignment:
Q  112 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    |||||||||||||| |||||||| ||||| || | ||| ||||||   ||||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  32579655 aggtgggtgttccgtggcgatcgatgaagatgaaatttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattg 32579752  T

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Target: scaffold0464 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 7407 - 7220
Alignment:
Q  22 gacggactctccagcaaacgacttactggaatgggtatgagactgtaatcaaagttgcccttgtctggtactcggaatgatctaagcaaaaggtgggtgt 121  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  | ||||| |||||||| |||| ||||||||||||||||    
T  7407 gacggactctccagcaaacgacttacaggaatggatatgagactgtaatcaaagttgccccagcctggttctcggaataatcttagcaaaaggtgggtgt 7308  T
Q  122 tccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7307 tccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 7220  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 19778879 - 19778782
Alignment:
Q  112 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    ||||| ||||||||  ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  19778879 aggtgtgtgttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccaagatttgcaaacacatttgaattg 19778782  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 19888504 - 19888601
Alignment:
Q  112 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    ||||| |||||||| ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  19888504 aggtgtgtgttccgcggcgaacgctgaagatggagtttggcgaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattg 19888601  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 19351793 - 19351890
Alignment:
Q  112 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    ||||||||||||||  |||| || | |||||||| ||| | |||||||||||||||||| || |||||| |||||||||| || ||||||||||||||    
T  19351793 aggtgggtgttccgtcgcgaccggtaaaggtgcaatttggtgaaggaaggatcatgagaaatcagggttgtccatgatttacaaacacatttgaattg 19351890  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 19357181 - 19357108
Alignment:
Q  136 tgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    |||||||||| ||| | |||||||| ||||||||| || |||||||||||||||||||| || |||||||||||    
T  19357181 tgaaggtgcaatttggtgaaggaagaatcatgagaaataagggttttccatgatttgcaaacgcatttgaattg 19357108  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 19598578 - 19598622
Alignment:
Q  165 atgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  19598578 atgagagattagggttttccatgacttgcagacgcatttgaattg 19598622  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 19721275 - 19721240
Alignment:
Q  168 agagattagggttttccatgatttgcagacacattt 203  Q
    |||||||||||||||| |||||||||||||||||||    
T  19721275 agagattagggttttcaatgatttgcagacacattt 19721240  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 19879702 - 19879739
Alignment:
Q  172 attagggttttccatgatttgcagacacatttgaattg 209  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  19879702 attagggttttccaagatttgcaaacacatttgaattg 19879739  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 14748657 - 14748577
Alignment:
Q  128 gcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattg 209  Q
    ||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  14748657 gcgatcgctgaagatgca-tttggcaaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattg 14748577  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 18921488 - 18921574
Alignment:
Q  114 gtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacattt 203  Q
    |||||||||||| |||||||| |||||||||| |||  ||||||||||   |||||| |||||||||||| |||||||||| || |||||    
T  18921488 gtgggtgttccgcggcgatcgatgaaggtgcattttgacgaaggaagg---atgagaaattagggttttcaatgatttgcaaacgcattt 18921574  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 18909593 - 18909678
Alignment:
Q  115 tgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacattt 203  Q
    ||||||||||| || ||||| |||||||||| ||| |||||| ||||   |||||| |||||||||||| |||||||||| || |||||    
T  18909593 tgggtgttccgtggtgatcggtgaaggtgcaatttggcgaagaaagg---atgagaaattagggttttcaatgatttgcaaacgcattt 18909678  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 18914343 - 18914426
Alignment:
Q  117 ggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacattt 203  Q
    |||||| || || ||||| |||||||||| |||  ||||||||||||   |||| |||||||||||| |||||||||| || |||||    
T  18914343 ggtgtttcgtggtgatcgatgaaggtgcaatttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcattt 18914426  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 20578964 - 20579004
Alignment:
Q  168 agagattagggttttccatgatttgcagacacatttgaatt 208  Q
    ||||||||||||||||||||||||||| |||| ||| ||||    
T  20578964 agagattagggttttccatgatttgcaaacacgtttcaatt 20579004  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 42693706 - 42693664
Alignment:
Q  168 agagattagggttttccatgatttgcagacacatttgaattga 210  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  42693706 agagattagagttttccatgatttgcagacacatttgaattga 42693664  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 42414204 - 42414163
Alignment:
Q  169 gagattagggttttccatgatttgcagacacatttgaattga 210  Q
    |||||||||||||||||||||||||| |||||  ||||||||    
T  42414204 gagattagggttttccatgatttgcatacacacctgaattga 42414163  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 43907725 - 43907684
Alignment:
Q  168 agagattagggttttccatgatttgcagacacatttgaattg 209  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  43907725 agagattagggttttccatgatttgcaaacacacttgtattg 43907684  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 43986909 - 43986950
Alignment:
Q  169 gagattagggttttccatgatttgcagacacatttgaattga 210  Q
    |||||||||||||||||||||||||| |  ||||||||||||    
T  43986909 gagattagggttttccatgatttgcaaatgcatttgaattga 43986950  T

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