View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_high_28 (Length: 212)
Name: NF10498_high_28
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 29438685 - 29438506
Alignment:
| Q |
15 |
agagatgagagtcgaaagggatgatttgaggaatcaagttccaagattaaaagctgagaaggaattggcaaagataacacaagataatattgaagaagag |
114 |
Q |
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| T |
29438685 |
agagatgagagtcgaaagggatgatttgaggaatcaagttccaagattaaaagctgagaaggaattggcaaagataacacaagataatattgaagaagag |
29438586 |
T |
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| Q |
115 |
tggtcaaagcttggagaacaattcattggaagcaccaattttgaagagtggagaacataatataagctatataaagaaaa |
194 |
Q |
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| T |
29438585 |
tggtcaaagcttggagaacaattcattggaagcaccaattttgaagagtggagaacataatataagctatataaagaaaa |
29438506 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 29634283 - 29634227
Alignment:
| Q |
90 |
aacacaagataatattgaagaagagtggtcaaagcttggagaacaattcattggaag |
146 |
Q |
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| T |
29634283 |
aacacgagataatattgaagctgagtggtccaagcttcgagaacaattcattcgaag |
29634227 |
T |
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