View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_high_3 (Length: 509)

Name: NF10498_high_3
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_high_3
NF10498_high_3
[»] chr4 (46 HSPs)
chr4 (346-449)||(38367197-38367300)
chr4 (129-211)||(5484668-5484750)
chr4 (129-211)||(43779781-43779863)
chr4 (129-211)||(39083767-39083849)
chr4 (129-211)||(39921622-39921704)
chr4 (129-211)||(42880675-42880757)
chr4 (129-211)||(44994201-44994283)
chr4 (129-211)||(32652227-32652309)
chr4 (133-211)||(39189510-39189588)
chr4 (13-80)||(39083898-39083965)
chr4 (13-80)||(39189641-39189708)
chr4 (13-80)||(43779665-43779732)
chr4 (13-80)||(44994085-44994152)
chr4 (212-281)||(39921491-39921560)
chr4 (13-80)||(5484799-5484866)
chr4 (13-80)||(39921753-39921820)
chr4 (17-80)||(42880563-42880626)
chr4 (212-278)||(5484540-5484606)
chr4 (212-282)||(39083635-39083705)
chr4 (212-277)||(39189383-39189448)
chr4 (13-80)||(32652358-32652425)
chr4 (212-278)||(5486077-5486143)
chr4 (212-278)||(42880813-42880879)
chr4 (212-278)||(43779925-43779991)
chr4 (212-278)||(44994345-44994411)
chr4 (212-273)||(32652104-32652165)
chr4 (139-201)||(4519535-4519597)
chr4 (366-411)||(38366625-38366670)
chr4 (225-278)||(39923045-39923098)
chr4 (137-201)||(11255841-11255905)
chr4 (225-281)||(42879272-42879328)
chr4 (227-278)||(47941811-47941862)
chr4 (225-279)||(44992807-44992861)
chr4 (225-278)||(2350578-2350631)
chr4 (137-190)||(27382287-27382340)
chr4 (137-198)||(51012087-51012148)
chr4 (225-281)||(10372777-10372833)
chr4 (225-281)||(39085190-39085246)
chr4 (225-280)||(10762579-10762634)
chr4 (225-279)||(4519375-4519429)
chr4 (225-279)||(44558564-44558618)
chr4 (225-278)||(2828449-2828502)
chr4 (225-278)||(35996063-35996116)
chr4 (137-201)||(2693154-2693218)
chr4 (142-198)||(2827566-2827622)
chr4 (142-198)||(35996225-35996281)
[»] chr6 (16 HSPs)
chr6 (129-211)||(17951956-17952038)
chr6 (133-206)||(35175781-35175854)
chr6 (212-283)||(17952100-17952171)
chr6 (13-80)||(17951840-17951907)
chr6 (13-78)||(35175661-35175726)
chr6 (16-80)||(34344065-34344129)
chr6 (212-278)||(35175921-35175987)
chr6 (171-211)||(34343963-34344003)
chr6 (225-278)||(4641355-4641408)
chr6 (225-278)||(17950561-17950614)
chr6 (137-198)||(9398822-9398883)
chr6 (228-279)||(35174390-35174441)
chr6 (225-278)||(3018534-3018587)
chr6 (225-278)||(29077328-29077381)
chr6 (225-278)||(30639611-30639664)
chr6 (212-273)||(34343848-34343909)
[»] chr2 (28 HSPs)
chr2 (129-211)||(11022927-11023009)
chr2 (129-211)||(28246791-28246873)
chr2 (212-278)||(28246663-28246729)
chr2 (129-208)||(38148627-38148706)
chr2 (15-80)||(11022813-11022878)
chr2 (21-80)||(28246922-28246981)
chr2 (21-80)||(38148755-38148814)
chr2 (212-274)||(11023071-11023132)
chr2 (225-274)||(39560-39609)
chr2 (225-281)||(28248213-28248269)
chr2 (225-280)||(41180-41235)
chr2 (229-280)||(15372497-15372548)
chr2 (231-281)||(42001607-42001657)
chr2 (225-278)||(42880849-42880902)
chr2 (137-198)||(44709666-44709727)
chr2 (137-201)||(19908167-19908231)
chr2 (212-279)||(38148494-38148562)
chr2 (141-198)||(6797669-6797726)
chr2 (137-198)||(10716804-10716865)
chr2 (225-278)||(11021533-11021586)
chr2 (137-198)||(14389005-14389066)
chr2 (137-198)||(17946256-17946317)
chr2 (148-201)||(37417432-37417485)
chr2 (225-278)||(41706539-41706592)
chr2 (226-278)||(33193-33245)
chr2 (225-277)||(25619661-25619713)
chr2 (137-201)||(40560382-40560446)
chr2 (137-201)||(42519126-42519190)
[»] chr8 (17 HSPs)
chr8 (129-211)||(40020549-40020631)
chr8 (129-209)||(28433630-28433710)
chr8 (13-80)||(40020433-40020500)
chr8 (17-80)||(28433517-28433580)
chr8 (212-278)||(40020693-40020759)
chr8 (351-434)||(1283967-1284051)
chr8 (137-201)||(13108258-13108322)
chr8 (212-272)||(28433774-28433834)
chr8 (226-278)||(31201215-31201267)
chr8 (137-201)||(38547386-38547450)
chr8 (225-279)||(42897845-42897899)
chr8 (137-198)||(5036611-5036672)
chr8 (137-201)||(8609709-8609773)
chr8 (225-281)||(32822358-32822414)
chr8 (142-201)||(42897680-42897739)
chr8 (225-283)||(40019151-40019209)
chr8 (226-278)||(33748332-33748384)
[»] chr7 (35 HSPs)
chr7 (129-211)||(4322486-4322568)
chr7 (129-211)||(45463798-45463880)
chr7 (129-208)||(48303563-48303642)
chr7 (129-208)||(34691126-34691205)
chr7 (13-80)||(45463929-45463996)
chr7 (212-277)||(30109724-30109789)
chr7 (212-279)||(45463669-45463736)
chr7 (13-80)||(4322370-4322437)
chr7 (13-80)||(48303447-48303514)
chr7 (215-278)||(34690995-34691058)
chr7 (15-80)||(34691254-34691319)
chr7 (139-198)||(38613625-38613684)
chr7 (360-416)||(48718307-48718363)
chr7 (212-278)||(4322630-4322696)
chr7 (139-198)||(2167641-2167700)
chr7 (225-279)||(23955323-23955377)
chr7 (225-283)||(30108560-30108618)
chr7 (137-201)||(39859130-39859194)
chr7 (139-198)||(23953967-23954026)
chr7 (226-281)||(46994657-46994712)
chr7 (225-280)||(46996773-46996828)
chr7 (142-201)||(47341588-47341647)
chr7 (225-279)||(4321037-4321091)
chr7 (225-279)||(47341757-47341811)
chr7 (137-198)||(1546449-1546510)
chr7 (225-278)||(8423352-8423405)
chr7 (225-278)||(35344361-35344414)
chr7 (137-198)||(46439431-46439492)
chr7 (225-278)||(46812653-46812706)
chr7 (138-190)||(2492496-2492548)
chr7 (225-281)||(8421413-8421469)
chr7 (137-201)||(30940326-30940390)
chr7 (141-197)||(35693275-35693331)
chr7 (137-201)||(38474044-38474108)
chr7 (230-278)||(40785591-40785639)
[»] chr5 (18 HSPs)
chr5 (129-211)||(42620677-42620759)
chr5 (17-80)||(42620565-42620628)
chr5 (215-278)||(42620824-42620887)
chr5 (225-279)||(38596867-38596921)
chr5 (137-201)||(17574476-17574540)
chr5 (225-279)||(32089963-32090017)
chr5 (137-198)||(7268004-7268065)
chr5 (142-201)||(18728508-18728567)
chr5 (142-201)||(32087673-32087732)
chr5 (225-279)||(18726564-18726618)
chr5 (225-263)||(38176647-38176685)
chr5 (225-263)||(38203871-38203909)
chr5 (225-279)||(40330553-40330607)
chr5 (225-278)||(32835876-32835929)
chr5 (225-270)||(33257798-33257843)
chr5 (233-278)||(43318139-43318184)
chr5 (137-169)||(27349337-27349369)
chr5 (246-278)||(33256400-33256432)
[»] chr1 (20 HSPs)
chr1 (129-211)||(5783492-5783574)
chr1 (15-80)||(5783623-5783688)
chr1 (212-278)||(5783364-5783430)
chr1 (225-278)||(27940608-27940661)
chr1 (225-278)||(33685319-33685372)
chr1 (137-198)||(34778040-34778101)
chr1 (137-201)||(15104600-15104664)
chr1 (138-198)||(18183846-18183906)
chr1 (137-201)||(27087441-27087505)
chr1 (225-280)||(11152543-11152598)
chr1 (226-281)||(31803739-31803794)
chr1 (142-201)||(45380890-45380949)
chr1 (225-279)||(47269527-47269581)
chr1 (137-198)||(4855868-4855929)
chr1 (225-278)||(33679259-33679312)
chr1 (233-278)||(42134482-42134527)
chr1 (225-278)||(45379085-45379138)
chr1 (137-197)||(3013371-3013431)
chr1 (137-201)||(31238396-31238460)
chr1 (142-198)||(46638713-46638769)
[»] chr3 (28 HSPs)
chr3 (129-211)||(41944702-41944784)
chr3 (13-80)||(41944833-41944900)
chr3 (212-278)||(41944576-41944642)
chr3 (363-421)||(43362145-43362203)
chr3 (137-201)||(2226074-2226138)
chr3 (278-330)||(8651289-8651341)
chr3 (278-332)||(8652002-8652056)
chr3 (225-279)||(40508982-40509036)
chr3 (137-198)||(53190681-53190742)
chr3 (137-201)||(30599839-30599903)
chr3 (138-190)||(33113083-33113135)
chr3 (137-188)||(44276117-44276168)
chr3 (225-279)||(23774151-23774205)
chr3 (139-201)||(31887355-31887417)
chr3 (137-195)||(35905634-35905692)
chr3 (137-195)||(54898601-54898659)
chr3 (137-198)||(17515472-17515533)
chr3 (137-198)||(23293091-23293152)
chr3 (230-279)||(24382969-24383018)
chr3 (230-279)||(39641915-39641964)
chr3 (225-278)||(40508493-40508546)
chr3 (225-278)||(41021074-41021127)
chr3 (137-198)||(41977911-41977972)
chr3 (225-286)||(45257291-45257352)
chr3 (226-279)||(48633876-48633929)
chr3 (225-278)||(48635411-48635464)
chr3 (246-286)||(45255475-45255515)
chr3 (142-190)||(48634051-48634099)
[»] scaffold0477 (1 HSPs)
scaffold0477 (225-278)||(6705-6758)
[»] scaffold1454 (1 HSPs)
scaffold1454 (137-201)||(1421-1485)
[»] scaffold0564 (1 HSPs)
scaffold0564 (137-198)||(8422-8483)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 38367300 - 38367197
Alignment:
Q  346 gagattgatagaactaaatctcaaccattaaataaaaaatgcatggttaagattaaaacatcacattaaaactcacatgcgcctcattctcgttgtcacc 445  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38367300 gagattgatagaactaaatcttaaccattaaataaaaaatgcatggttaagattaaaacatcacattaaaactcacatgcgcctcattctcgttgtcacc 38367201  T
Q  446 tctc 449  Q
    ||||    
T  38367200 tctc 38367197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 5484750 - 5484668
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484750 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 5484668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 43779781 - 43779863
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43779781 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 43779863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 39083849 - 39083767
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39083849 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacaacacactaacgga 39083767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 39921704 - 39921622
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39921704 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacatgtacaagccaacacagcacactaacgga 39921622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 42880675 - 42880757
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42880675 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagtcaacacagcacactaacgga 42880757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 44994201 - 44994283
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  44994201 tttcgtattttccatcaatttagtccctgtacacatgactttctttttcccacgtgtacaagccaacacagcacactaacgga 44994283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 32652309 - 32652227
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  32652309 tttcgtattttccatcaatttagtccatgtacacgtggcttcctttttcccacgtgtataagccaacacagcacactaacgga 32652227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 39189588 - 39189510
Alignment:
Q  133 gtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  39189588 gtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacaacacattaacgga 39189510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 39083965 - 39083898
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39083965 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 39083898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 39189708 - 39189641
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39189708 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 39189641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 43779665 - 43779732
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43779665 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 43779732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 44994085 - 44994152
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44994085 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 44994152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 39921560 - 39921491
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  39921560 ttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcactcatt 39921491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 5484866 - 5484799
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5484866 agacatggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 5484799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 39921820 - 39921753
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  39921820 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacacaggggt 39921753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 42880563 - 42880626
Alignment:
Q  17 agggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42880563 agggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 42880626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 5484606 - 5484540
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  5484606 ttcgttaaatttggggacgaatttggccgacccctaaaaattcatggacgaaattgatggttcactc 5484540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 39083705 - 39083635
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatta 282  Q
    |||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  39083705 ttcgttaaatttagggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcactcatta 39083635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 39189448 - 39189383
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcact 277  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  39189448 ttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcact 39189383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 32652425 - 32652358
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  32652425 agacagggacttagttgatgtgttctgtatgaaatgtgaggatgtatggtaatgggaaacataggggt 32652358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 5486077 - 5486143
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5486077 ttcgttaaatttagggatgaatttggccgacccctaaaaattcagggacgaaattgatggttcactc 5486143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 42880813 - 42880879
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  42880813 ttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacaaaattgatggttcactc 42880879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 43779925 - 43779991
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  43779925 ttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgaaggttcactc 43779991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 44994345 - 44994411
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||| || |||||    
T  44994345 ttcgttaaatttggggacgaatttggccgacccctgaaaatttagggatgaaattgatagtacactc 44994411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 32652165 - 32652104
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggtt 273  Q
    ||||||||||| |||||||||||||||| | |||| ||||||||| ||||||||||||||||    
T  32652165 ttcgttaaattgggggacgaatttggccgaaccctgaaaattcagtgacgaaattgatggtt 32652104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 4519597 - 4519535
Alignment:
Q  139 tccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||| ||||||| || ||||||| |||||||||| ||||||||||||| ||||||||||    
T  4519597 tccatcaaattagtccttgaacacgtgactttctttttgccacgtgtacaagacaacacagca 4519535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 38366625 - 38366670
Alignment:
Q  366 tcaaccattaaataaaaaatgcatggttaagattaaaacatcacat 411  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||    
T  38366625 tcaaccatcaaataaaaaatgcatggttgagattaaaacatcacat 38366670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 39923045 - 39923098
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||| |||||| |||  |||||||||||||||||||||||||||||||||    
T  39923045 gggacgaagttggccgacctgtaaaaattcagggacgaaattgatggttcactc 39923098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 11255841 - 11255905
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| ||||||||||    
T  11255841 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 11255905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 42879328 - 42879272
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    |||||||| |||||| |||| |||||||||||||||||| |||||| ||||||||||    
T  42879328 gggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactcatt 42879272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 47941862 - 47941811
Alignment:
Q  227 gacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||| || |||| ||||||||||||||| |||||||||||||||||    
T  47941862 gacgaatttgaccgacccgtaaaaattcagggactaaattgatggttcactc 47941811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 44992861 - 44992807
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||||||| |||||| |||| |||||||||||||||||| |||||| ||||||||    
T  44992861 gggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactca 44992807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 2350578 - 2350631
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||| ||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  2350578 gggacaaatttggccgacccatgaaaattcagggactaaattgatggttcactc 2350631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 27382340 - 27382287
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaag 190  Q
    |||||||||| ||||||| |||||||||||||||||| ||  ||||||||||||    
T  27382340 tttccatcaaattagtccttgtacacgtggctttcttgttgacacgtgtacaag 27382287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 51012148 - 51012087
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||||    
T  51012148 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 51012087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 10372777 - 10372833
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    ||||| ||||||||| || | | |||||||||||||||| |||||||||||||||||    
T  10372777 gggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttcactcatt 10372833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 39085190 - 39085246
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    |||||||| ||| || |||| |||||||||||||||||| |||||| ||||||||||    
T  39085190 gggacgaagttgaccgacccgtaaaaattcagggacgaagttgatgattcactcatt 39085246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 10762634 - 10762579
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcat 280  Q
    ||||| ||||||||| || | | |||||||||||||||| ||||||||||||||||    
T  10762634 gggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttcactcat 10762579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 4519429 - 4519375
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||| ||||||||||||||  |||||||||| ||||||| ||||| |||||||||    
T  4519429 gggatgaatttggccaaccggtaaaaattcaaggacgaatttgattgttcactca 4519375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 44558564 - 44558618
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||| |||||||||| |||| | |||||||| ||||||| |||||||||||||||    
T  44558564 gggatgaatttggccgacccgtgaaaattcaaggacgaagttgatggttcactca 44558618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 2828449 - 2828502
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||| || |||||| |||| |||||||||||||||||| |||||| |||||||    
T  2828449 gggacaaagttggccgacccataaaaattcagggacgaagttgatgattcactc 2828502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 35996116 - 35996063
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||| || |||| ||||||| ||| ||| |||||||||||||||||    
T  35996116 gggacgaatttgaccgacccataaaaatccagagactaaattgatggttcactc 35996063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 2693154 - 2693218
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||| ||||||| |||||||||||||  ||| ||  |||||||||| | ||||||||||    
T  2693154 tttccatcaaattagtccttgtacacgtggctgccttcttgacacgtgtacaggacaacacagca 2693218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 2827622 - 2827566
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    ||||| |||||||||| ||||||||||| ||| || ||||| ||||||| |||||||    
T  2827622 atcaaattagtccctgaacacgtggcttccttcttgccacgcgtacaagacaacaca 2827566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 35996281 - 35996225
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    ||||| ||||||| || ||||||||||| ||| || ||||||||||||| |||||||    
T  35996281 atcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacaca 35996225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 17951956 - 17952038
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17951956 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 17952038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 35175781 - 35175854
Alignment:
Q  133 gtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacacta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35175781 gtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacacta 35175854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 17952100 - 17952171
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcattaa 283  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  17952100 ttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcactcattaa 17952171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 17951840 - 17951907
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  17951840 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacacaggggt 17951907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 35175661 - 35175726
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  35175661 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatgacaaacataggg 35175726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 34344129 - 34344065
Alignment:
Q  16 cagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  34344129 cagggacttagttgatgcgttctgtatgaaatgtgaggatgtatggtaatgggaaacataggggt 34344065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 35175921 - 35175987
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||| ||||||||||||| | |||| |||||||| ||||||||||||||||||||||    
T  35175921 ttcgttaaatttggagacgaatttggccgatccctgaaaattcaaggacgaaattgatggttcactc 35175987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 34344003 - 34343963
Alignment:
Q  171 ctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34344003 ctttttcccacgtgtacaagccaacacagcacactaacgga 34343963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 4641408 - 4641355
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  4641408 gggacgaatttggccgacccgtgaaaattcagggactaaattgatggttcactc 4641355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 17950614 - 17950561
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||| |||||| |||| |||||||||||||| ||||||||||||||||||    
T  17950614 gggacgaagttggccgacccgtaaaaattcagggatgaaattgatggttcactc 17950561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 9398883 - 9398822
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| ||||||||||||| |||| ||  |||||||||| | |||||||    
T  9398883 tttccatcaatttagtccttgtacacgtggctgtcttgttgacacgtgtacaggacaacaca 9398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 35174441 - 35174390
Alignment:
Q  228 acgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||| |||||| |||| |||||||||||||||||| |||||| ||||||||    
T  35174441 acgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactca 35174390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 3018534 - 3018587
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||| |||||| || | | |||||||||||||||| ||||||||||||||    
T  3018534 gggacgaagttggccgacgcgtgaaaattcagggacgaatttgatggttcactc 3018587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 29077381 - 29077328
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||| ||||||||| || | | |||||||||||||||| ||||||||||||||    
T  29077381 gggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttcactc 29077328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 30639664 - 30639611
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||| ||||||||| |||| | |||||||||||||||| |||||| |||||||    
T  30639664 gggactaatttggccgacccgtgaaaattcagggacgaagttgatgattcactc 30639611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 34343909 - 34343848
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggtt 273  Q
    ||||||||||| | |||| |||||| ||||  | |||||||||| |||||||||||||||||    
T  34343909 ttcgttaaattggaggacaaatttgaccaattcttaaaaattcaaggacgaaattgatggtt 34343848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 11022927 - 11023009
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11022927 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 11023009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 28246873 - 28246791
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246873 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 28246791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 28246729 - 28246663
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28246729 ttcgttaaatttggggacgaatttggccgacccctaaaaattcagggacgaaattgatggttcactc 28246663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 38148706 - 38148627
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaac 208  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||    
T  38148706 tttcatattttccatcaatttagtccctgtacacgtggcttcctttttccgacgtgtacaagccaatacaacacactaac 38148627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 11022813 - 11022878
Alignment:
Q  15 acagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  11022813 acagggacttagttgatgtgttatgtatgaaatatgaggatgtatggtaatggcaaacataggggt 11022878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 28246981 - 28246922
Alignment:
Q  21 acttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  28246981 acttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggtaaacataggggt 28246922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 38148814 - 38148755
Alignment:
Q  21 acttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  38148814 acttagttgatgtgttctgtatgaaatgtgaggatgtatggtaatgagaaacataggggt 38148755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 11023071 - 11023132
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttc 274  Q
    ||||||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  11023071 ttcgttaaattgggggacgaatttggccgaccc-tgaaaattcagggacgaaattgatggttc 11023132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 39609 - 39560
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttc 274  Q
    ||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  39609 gggacgaatttggccgacccgtaaaaattcagggactaaattgatggttc 39560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 28248213 - 28248269
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    |||||||| |||||| |||| |||||||||||||||||| |||||| ||||||||||    
T  28248213 gggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactcatt 28248269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 41180 - 41235
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcat 280  Q
    ||||||||||||||| |||| | |||||||||||||||| |||||| |||||||||    
T  41180 gggacgaatttggccgacccgtgaaaattcagggacgaagttgatgattcactcat 41235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 15372548 - 15372497
Alignment:
Q  229 cgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcat 280  Q
    ||||||||||| |||| | ||||||||||||| |||||||||||||||||||    
T  15372548 cgaatttggccgacccgtgaaaattcagggactaaattgatggttcactcat 15372497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 42001657 - 42001607
Alignment:
Q  231 aatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    ||||||| |||||| |||||||||| ||||||| |||||||||||||||||    
T  42001657 aatttggacaacccgtaaaaattcaaggacgaatttgatggttcactcatt 42001607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 42880849 - 42880902
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||| || |||| |||||||||||||||||| |||||| |||||||    
T  42880849 gggacgaatttgaccgacccgtaaaaattcagggacgaagttgatgattcactc 42880902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 44709666 - 44709727
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| ||||||||||| | |||| ||  |||||||||||| |||||||    
T  44709666 tttccatcaatttagtccttgtacacgtggatgtcttgttgacacgtgtacaagacaacaca 44709727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 19908167 - 19908231
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||| ||||||| ||||||||||||| |||| ||  |||||||||| | ||||||||||    
T  19908167 tttccatcaaattagtccttgtacacgtggctgtcttgttgacacgtgtacatgacaacacagca 19908231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 38148562 - 38148494
Alignment:
Q  212 ttcgttaaatttggggacgaatttggcca-acccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||||||||| |||||| |||||||||  | | || |||||||||||||||||||||||||| |||||    
T  38148562 ttcgttaaattgggggacaaatttggcccgatctctgaaaattcagggacgaaattgatggtttactca 38148494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 6797726 - 6797669
Alignment:
Q  141 catcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||||    
T  6797726 catcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 6797669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 10716804 - 10716865
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||| || |||| |||||||||||||| ||| ||  |||||||||||| |||||||    
T  10716804 tttccatcaaattggtccttgtacacgtggcttccttgttgacacgtgtacaagacaacaca 10716865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 11021586 - 11021533
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||| |||||| |||| | |||||||||||||||| |||||| |||||||    
T  11021586 gggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 11021533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 14389005 - 14389066
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||| ||||||| |||||||||||||  ||| ||  |||||||||||| |||||||    
T  14389005 tttccatcaagttagtccttgtacacgtggctgccttattgacacgtgtacaagacaacaca 14389066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 17946317 - 17946256
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||| ||| ||||||  || ||||||| | |||||||    
T  17946317 tttccatcaatttagtccttgtacacgtgacttcctttttgacatgtgtacatgacaacaca 17946256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 37417485 - 37417432
Alignment:
Q  148 ttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    ||||||| || ||||||||||| ||| || ||||||||||||| ||||||||||    
T  37417485 ttagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagca 37417432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 41706592 - 41706539
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||| || |||| | |||||||||| || |||||||||||||||||    
T  41706592 gggacgaatttgaccgacccgtgaaaattcaggaactaaattgatggttcactc 41706539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 33245 - 33193
Alignment:
Q  226 ggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||| |||||| |||| | |||||||||||||||| |||||| |||||||    
T  33245 ggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 33193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 25619713 - 25619661
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcact 277  Q
    |||| ||||||| || |||| |||||||||| ||||||| |||||||||||||    
T  25619713 gggatgaatttgaccgacccataaaaattcaaggacgaatttgatggttcact 25619661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 40560446 - 40560382
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||| ||||| | ||||||||||    
T  40560446 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgcgtacatgacaacacagca 40560382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 42519126 - 42519190
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||| ||  ||| ||  |||||||||| | ||||||||||    
T  42519126 tttccatcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaggacaacacagca 42519190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 40020549 - 40020631
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40020549 tttcgtattttccatcaatttagtccctgtacacgtggttttctttttcccacgtgtacaagccaacacagcacactaacgga 40020631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 28433630 - 28433710
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacg 209  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  28433630 tttcgtattttccatcaatttagtccatgtacacgtggcttcctttttcccacgtgtacaagccaacacaacaaactaacg 28433710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 40020433 - 40020500
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40020433 agacagagacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 40020500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 28433517 - 28433580
Alignment:
Q  17 agggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  28433517 agggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatgggaaacataggggt 28433580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 40020693 - 40020759
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  40020693 ttcgttaaatttggggacgaatttggcagacccctaaagattcagggacgaaattgatggttcactc 40020759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 1284051 - 1283967
Alignment:
Q  351 tgatagaactaaatctcaaccattaaataaaaaatgcatggttaagattaaaacatcacattaaaactcacatg-cgcctcattc 434  Q
    ||||| || |||||||||| ||||  ||||||||||||||| |||||||||||||| |||| |||||| || || ||||||||||    
T  1284051 tgataaaaataaatctcaatcatttgataaaaaatgcatggctaagattaaaacataacatcaaaactaacgtgtcgcctcattc 1283967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 13108258 - 13108322
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| ||||||||||    
T  13108258 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 13108322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 28433774 - 28433834
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggt 272  Q
    |||||||||||  ||||||||||||||| | || | |||||||||||||||||||||||||    
T  28433774 ttcgttaaattgagggacgaatttggccgatccttgaaaattcagggacgaaattgatggt 28433834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 31201215 - 31201267
Alignment:
Q  226 ggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  31201215 ggacgaatttggccgacccgtgaaaattcagggactaaattgatggttcactc 31201267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 38547450 - 38547386
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| ||||||||||    
T  38547450 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 38547386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 42897845 - 42897899
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||||||||||||| |||| |||||||||| ||||| | |||||||||||||||    
T  42897845 gggacgaatttggccgacccgtaaaaattcaaggacggatttgatggttcactca 42897899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 5036672 - 5036611
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||||    
T  5036672 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 5036611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 8609709 - 8609773
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| |   |||||||||||| ||||||||||    
T  8609709 tttccatcaatttagtccttgtacacgtggctgccttgtcgacacgtgtacaagacaacacagca 8609773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 32822414 - 32822358
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    |||| |||||||||| | || |||||||||| ||||||| |||||||||||||||||    
T  32822414 gggatgaatttggccgatccataaaaattcaaggacgaagttgatggttcactcatt 32822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 42897680 - 42897739
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    ||||| ||||||| || ||||||||||| ||| || ||||||||||||| ||||||||||    
T  42897680 atcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagca 42897739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 40019209 - 40019151
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcattaa 283  Q
    |||||||| |||||| |||| ||||||||||  |||||| |||||| ||||||||||||    
T  40019209 gggacgaagttggccgacccgtaaaaattcaaagacgaagttgatgattcactcattaa 40019151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 33748384 - 33748332
Alignment:
Q  226 ggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||| |||||| |||| | |||||||||||||||| |||||| |||||||    
T  33748384 ggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 33748332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 4322486 - 4322568
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4322486 tttcgtattttccatcaatttagtccctgtacacgtgactttctttttcccacgtgtacaagccaacacagcacactaacgga 4322568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 45463880 - 45463798
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45463880 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacaacacactaacgga 45463798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 48303563 - 48303642
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaac 208  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48303563 tttcgtattttctatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaac 48303642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 34691205 - 34691126
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaac 208  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||    
T  34691205 tttcgtattttccatcaatttaatccctgtacacgtggcttccttgttgccacgtgtacaagccaacacaacacactaac 34691126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 45463996 - 45463929
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  45463996 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatgacaaacataggggt 45463929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 30109724 - 30109789
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcact 277  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  30109724 ttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcact 30109789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 45463736 - 45463669
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  45463736 ttcgttaaatttagggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcactca 45463669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 4322370 - 4322437
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||    
T  4322370 agacagggacttagttgatgtgttctgtatgaaaggtgagcatgtatggtaatggcaaacataggggt 4322437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 48303447 - 48303514
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  48303447 agacagggacttaattgatgtgttctgtatgaaatgtgaggatgtatggtaatgggaaacataggggt 48303514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 34691058 - 34690995
Alignment:
Q  215 gttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||    
T  34691058 gttaaatttggggacgaatttggccgatccctaaaaattcagggatgaaattgatggtttactc 34690995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 34691319 - 34691254
Alignment:
Q  15 acagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||    
T  34691319 acagtgacttagttgatgtgttctgtatgaaatgtgaggatgtatggtagtggaaaacataggggt 34691254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 38613684 - 38613625
Alignment:
Q  139 tccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||    
T  38613684 tccatcaagttagtccttgaacacgtggctttctttttcccacgtgtacaagacaacaca 38613625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 48718307 - 48718363
Alignment:
Q  360 taaatctcaaccattaaataaaaaatgcatggttaagattaaaacatcacattaaaa 416  Q
    ||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  48718307 taaatcttaaccattaaatgaaaaatgcacggttgagattaaaacatcacattaaaa 48718363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 4322630 - 4322696
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||||||| |||||||| ||||||| | |||| || ||||||||||||||||||||||| ||||    
T  4322630 ttcgttaaattgggggacgagtttggccgatccctgaatattcagggacgaaattgatggtttactc 4322696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 2167700 - 2167641
Alignment:
Q  139 tccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||| ||||||| || || ||||||||||||||| ||||||||||||| |||||||    
T  2167700 tccatcaaattagtccttgaacgcgtggctttctttttgccacgtgtacaagacaacaca 2167641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 23955323 - 23955377
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||||||||||||||| || ||||||||||| |||||| |||||| ||||||||    
T  23955323 gggacgaatttggccaatccataaaaattcagagacgaagttgatgattcactca 23955377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 30108618 - 30108560
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcattaa 283  Q
    |||||||| |||||| |||| |||||||||||||||||| |||||| ||||||| ||||    
T  30108618 gggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactcgttaa 30108560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 39859130 - 39859194
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||| ||||||| ||||||||||||| |||| ||  |||||||||| | ||||||||||    
T  39859130 tttccatcaaattagtccttgtacacgtggctgtcttgttgacacgtgtacatgacaacacagca 39859194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 23954026 - 23953967
Alignment:
Q  139 tccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||| |||||||  | ||||||||||| |||||| ||||||||||||| |||||||    
T  23954026 tccatcaaattagtcctggaacacgtggcttcctttttgccacgtgtacaagacaacaca 23953967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 46994712 - 46994657
Alignment:
Q  226 ggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    ||||||| |||||| |||| | |||||||||||||||| |||||| ||||||||||    
T  46994712 ggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactcatt 46994657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 46996773 - 46996828
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcat 280  Q
    |||||||| |||||| || | | |||||||||||||||| ||||||||||||||||    
T  46996773 gggacgaagttggccgacgcgtgaaaattcagggacgaatttgatggttcactcat 46996828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 47341588 - 47341647
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    ||||| ||||||| || ||||||||||| ||| || ||||||||||||| ||||||||||    
T  47341588 atcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagca 47341647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 4321091 - 4321037
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||||||| |||||| |||| | |||||||||||||||| |||||| ||||||||    
T  4321091 gggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactca 4321037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 47341757 - 47341811
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||| |||||||||| |||| | |||||||| ||||||| |||||||||||||||    
T  47341757 gggatgaatttggccgacccgtgaaaattcaaggacgaatttgatggttcactca 47341811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 1546510 - 1546449
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||| ||| ||||||  ||||| || ||| |||||||    
T  1546510 tttccatcaatttagtccttgtacacgtgacttcctttttgacacgtatataagacaacaca 1546449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 8423352 - 8423405
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||| ||||||||  |||| | ||||||||||||| |||||||||||||||||    
T  8423352 gggacaaatttggctgacccgtgaaaattcagggactaaattgatggttcactc 8423405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 35344361 - 35344414
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||||||||||  |||| | ||||||| ||||| |||||||||||||||||    
T  35344361 gggacgaatttggctgacccgtgaaaattcggggactaaattgatggttcactc 35344414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 46439431 - 46439492
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||||||  | | ||  |||||||||||| |||||||    
T  46439431 tttccatcaatttagtccatgtacacgtggctgccctgttgacacgtgtacaagacaacaca 46439492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 46812653 - 46812706
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||| |||||||||| || | |||||||||| ||||||| ||||||||||||||    
T  46812653 gggatgaatttggccgactcgtaaaaattcaaggacgaagttgatggttcactc 46812706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 2492548 - 2492496
Alignment:
Q  138 ttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaag 190  Q
    ||||||||| ||||||| || ||||||| ||| |||||| |||||||||||||    
T  2492548 ttccatcaaattagtccttgaacacgtgacttcctttttgccacgtgtacaag 2492496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 8421469 - 8421413
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    ||||||||||||||| |||| | | ||||||||||| || |||||| ||||||||||    
T  8421469 gggacgaatttggccgacccgtgataattcagggactaagttgatgattcactcatt 8421413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 30940326 - 30940390
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||  || ||||||| | ||||||||||    
T  30940326 tttccatcaatttagtccttgtacacgtggctgccttgttgacatgtgtacaggacaacacagca 30940390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 35693275 - 35693331
Alignment:
Q  141 catcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacac 197  Q
    |||||||||||||| |||||||||||||  ||| ||  |||||||||||| ||||||    
T  35693275 catcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacac 35693331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 38474044 - 38474108
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||| ||||| || |||||||||| |||| ||  |||||||||| | ||||||||||    
T  38474044 tttccatcaattcagtccttgcacacgtggctgtcttgttgacacgtgtacaggacaacacagca 38474108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 40785591 - 40785639
Alignment:
Q  230 gaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||| |||| | |||||||| |||||||||||||| |||||||    
T  40785591 gaatttggccgacccgtgaaaattcaaggacgaaattgatgattcactc 40785639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 42620677 - 42620759
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42620677 tttcgtattttccatcaatttagtccctatacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 42620759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 42620565 - 42620628
Alignment:
Q  17 agggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42620565 agggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 42620628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 42620824 - 42620887
Alignment:
Q  215 gttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||| |||||||||||||||| |||||| ||||||| |||| ||||||||||||| ||||    
T  42620824 gttaaattgggggacgaatttggccgacccctgaaaattccgggatgaaattgatggttgactc 42620887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 38596921 - 38596867
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||    
T  38596921 gggacgaatttggccgacccataaaaattcaaggacgaatttgatggttcactca 38596867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 17574540 - 17574476
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| ||||||||||    
T  17574540 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 17574476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 32089963 - 32090017
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||||||| |||||| |||| |||||||||||||||||| |||||| ||||||||    
T  32089963 gggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactca 32090017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 7268065 - 7268004
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||||    
T  7268065 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 7268004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 18728508 - 18728567
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    ||||| |||||||||  ||||||||||| ||| || ||||||||||||| ||||||||||    
T  18728508 atcaaattagtcccttaacacgtggcttccttcttgccacgtgtacaagacaacacagca 18728567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 32087732 - 32087673
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    ||||| |||||||||| ||||||||||| ||| || ||||| ||||||| ||||||||||    
T  32087732 atcaaattagtccctgaacacgtggcttccttcttgccacgcgtacaagacaacacagca 32087673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 18726618 - 18726564
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||||||| ||||  ||||| |||||||||||||||||| |||||| ||||||||    
T  18726618 gggacgaagttggggaacccgtaaaaattcagggacgaagttgatgattcactca 18726564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 38176685 - 38176647
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaa 263  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  38176685 gggacgaatttggccaacccatgaaaattcagggacgaa 38176647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 38203909 - 38203871
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaa 263  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  38203909 gggacgaatttggccaacccatgaaaattcagggacgaa 38203871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 40330553 - 40330607
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||||| ||||||| |||| | |||||||||||||||| |||||| ||||||||    
T  40330553 gggacgattttggccgacccgtgaaaattcagggacgaagttgatgattcactca 40330607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 32835929 - 32835876
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||| || |||| | |||||||||||||||| |||||| |||||||    
T  32835929 gggacgaatttgaccgacccgtgaaaattcagggacgaagttgatgattcactc 32835876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 33257798 - 33257843
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatg 270  Q
    |||||||| |||||| |||| |||||||||||||||||| ||||||    
T  33257798 gggacgaagttggccgacccgtaaaaattcagggacgaagttgatg 33257843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 43318139 - 43318184
Alignment:
Q  233 tttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||| |||| |||||||||| ||||||| ||||||||||||||    
T  43318139 tttggccgacccataaaaattcaaggacgaatttgatggttcactc 43318184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 27349369 - 27349337
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctt 169  Q
    |||||||||||||||||| ||||||||||||||    
T  27349369 tttccatcaatttagtccttgtacacgtggctt 27349337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 33256432 - 33256400
Alignment:
Q  246 taaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||||||||| ||||||||||||||    
T  33256432 taaaaattcagggacgaatttgatggttcactc 33256400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 5783574 - 5783492
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5783574 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacaacacactaacgga 5783492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 5783688 - 5783623
Alignment:
Q  15 acagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5783688 acagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaacataggggt 5783623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 5783430 - 5783364
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||||||| || || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5783430 ttcgttaaattgggagatgaatttggccgacccctaaaaattcagggacgaaattgatggttcactc 5783364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 27940661 - 27940608
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||| ||||||  | ||||||||||||| |||||||||||||||||    
T  27940661 gggacgaatttgaccaacctgtgaaaattcagggactaaattgatggttcactc 27940608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 33685319 - 33685372
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||| ||||||| || |||| |||||||||||||||||| ||||||||||||||    
T  33685319 gggatgaatttgaccgacccgtaaaaattcagggacgaatttgatggttcactc 33685372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 34778040 - 34778101
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||||    
T  34778040 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 34778101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 15104664 - 15104600
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||| ||||||| |||||||||||||  ||| ||  |||||||||||| ||||||||||    
T  15104664 tttccatcaaattagtccttgtacacgtggctgccttattgacacgtgtacaagacaacacagca 15104600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 18183846 - 18183906
Alignment:
Q  138 ttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    ||||||||| ||||||| || |||||||||||  ||||| ||||||||||||| |||||||    
T  18183846 ttccatcaaattagtccttgaacacgtggcttcttttttgccacgtgtacaagacaacaca 18183906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 27087505 - 27087441
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||| ||||| |||||||||||||  ||| ||  |||||||||||| ||||||||||    
T  27087505 tttccatcaattcagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagca 27087441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 11152598 - 11152543
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcat 280  Q
    |||||||| |||||| |||| | |||||||||||||||| |||||| |||||||||    
T  11152598 gggacgaaattggccgacccgtgaaaattcagggacgaagttgatgattcactcat 11152543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 31803739 - 31803794
Alignment:
Q  226 ggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcatt 281  Q
    ||||||| |||||| |||| | |||||||||||||||| |||||| ||||||||||    
T  31803739 ggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactcatt 31803794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 45380890 - 45380949
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    ||||| ||||||| || ||||||||||| ||| || ||||||||||||| ||||||||||    
T  45380890 atcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagca 45380949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 47269527 - 47269581
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||| ||||||||| || | | |||||||||||||||| |||||||||||||||    
T  47269527 gggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttcactca 47269581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 4855868 - 4855929
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||| ||  ||| ||  |||||||||||| |||||||    
T  4855868 tttccatcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaagacaacaca 4855929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 33679312 - 33679259
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||||||||||  |||| |||||||||| |||| ||||||||| |||||||    
T  33679312 gggacgaatttggctgacccgtaaaaattcatggacaaaattgatgattcactc 33679259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 42134527 - 42134482
Alignment:
Q  233 tttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||| |||| |||||||||| ||||||| ||||||||||||||    
T  42134527 tttggccgacccgtaaaaattcaaggacgaatttgatggttcactc 42134482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 45379138 - 45379085
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||| |||||| |||| | |||||||||||||||| |||||| |||||||    
T  45379138 gggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 45379085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 3013371 - 3013431
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacac 197  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||| | ||||||    
T  3013371 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacatgacaacac 3013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 31238396 - 31238460
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||| ||||||| |||||||||||||  ||| ||  |||||||||| | ||||||||||    
T  31238396 tttccatcaaattagtccttgtacacgtggctgccttgttgacacgtgtacatgacaacacagca 31238460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 46638713 - 46638769
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    ||||| || ||||||| ||||||||||| |||||| ||||| ||||||| |||||||    
T  46638713 atcaaattcgtccctgaacacgtggcttcctttttgccacgcgtacaagacaacaca 46638769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 41944784 - 41944702
Alignment:
Q  129 tttcgtattttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagcacactaacgga 211  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  41944784 tttcgtattttccatcaatttagtccctgtacacgcggcttcctttttcccacgtgtacaagccaacacagcacactaacgga 41944702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 41944900 - 41944833
Alignment:
Q  13 agacagggacttagttgatgtgttctgtatgaaatatgaggatgtatggtaatggcaaagataggggt 80  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||| ||||||||    
T  41944900 agacagggacttagttgatgtgttctgtataaaatgtgaggatttatggtaatggaaaacataggggt 41944833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 41944642 - 41944576
Alignment:
Q  212 ttcgttaaatttggggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||| ||||    
T  41944642 ttcgttaaattgggggacgaatttggccgatccctgaaaattcagggacgaaattgatggtttactc 41944576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 43362203 - 43362145
Alignment:
Q  363 atctcaaccattaaataaaaaatgcatggttaagattaaaacatcacattaaaactcac 421  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||| ||||    
T  43362203 atctcaaccattaaataaaaaatgcacagttgagattaaaacatcacattaaaagtcac 43362145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 2226074 - 2226138
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| ||||||||||    
T  2226074 tttccatcaatttagtccttgtacacgtggctaccttgttgacacgtgtacaagacaacacagca 2226138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 8651341 - 8651289
Alignment:
Q  278 cattaattatccctttcgtctctcattttaaaaactcctcccacttgaaacat 330  Q
    |||||||||||||| || |||||||||||||||||||||| || |||||||||    
T  8651341 cattaattatccctctcatctctcattttaaaaactcctctcatttgaaacat 8651289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 8652002 - 8652056
Alignment:
Q  278 cattaattatccctttcgtctctcattttaaaaactcctcccacttgaaacatcc 332  Q
    |||||||||||||| || |||||||||||||||||||||| || |||| ||||||    
T  8652002 cattaattatccctctcatctctcattttaaaaactcctctcatttgatacatcc 8652056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 40508982 - 40509036
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||||||||||||| |||| | |||||||| ||||||| |||||||||||||||    
T  40508982 gggacgaatttggccgacccgtgaaaattcaaggacgaatttgatggttcactca 40509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 53190681 - 53190742
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||||    
T  53190681 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 53190742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 30599839 - 30599903
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||  || ||||||||| ||||||||||    
T  30599839 tttccatcaatttagtccttgtacacgtggctgccttattgacatgtgtacaagacaacacagca 30599903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 33113083 - 33113135
Alignment:
Q  138 ttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaag 190  Q
    ||||||||| ||||||| || ||||||||||| |||||| |||||||||||||    
T  33113083 ttccatcaaattagtccttgaacacgtggcttcctttttgccacgtgtacaag 33113135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 44276117 - 44276168
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtaca 188  Q
    |||||||||||||||||| ||||||||||||| |||| ||  ||||||||||    
T  44276117 tttccatcaatttagtccttgtacacgtggctgtcttgttgacacgtgtaca 44276168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 23774205 - 23774151
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||||||||||||| || | | |||||||| ||||||| |||||||||||||||    
T  23774205 gggacgaatttggccgactcgtgaaaattcaaggacgaatttgatggttcactca 23774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 31887355 - 31887417
Alignment:
Q  139 tccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||| ||||||| || |||  |||||| |||||| ||||||||||||| ||||||||||    
T  31887355 tccatcaaattagtccttgaacatatggcttcctttttgccacgtgtacaagacaacacagca 31887417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 35905634 - 35905692
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaac 195  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| ||||    
T  35905634 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaac 35905692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 54898659 - 54898601
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaac 195  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||||| ||||    
T  54898659 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaac 54898601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 17515533 - 17515472
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||||||  ||| ||  || ||||||||| |||||||    
T  17515533 tttccatcaatttagtccttgtacacgtggctgccttattgacaagtgtacaagacaacaca 17515472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 23293091 - 23293152
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||||||  ||| ||  |||||||||| | |||||||    
T  23293091 tttccatcaatttagtccttgtacacgtggctgccttgttgacacgtgtacatgacaacaca 23293152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 24382969 - 24383018
Alignment:
Q  230 gaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||||||||| |||| |||||||||| |||| || |||||||||||||||    
T  24382969 gaatttggccgacccgtaaaaattcaaggaccaatttgatggttcactca 24383018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 39641915 - 39641964
Alignment:
Q  230 gaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    |||||||||| |||| |||||||||| |||| || |||||||||||||||    
T  39641915 gaatttggccgacccgtaaaaattcaaggacaaatttgatggttcactca 39641964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 40508546 - 40508493
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||| || |||| | |||||||||||||||| |||||| |||||||    
T  40508546 gggacgaatttgtccgacccgtgaaaattcagggacgaagttgatgattcactc 40508493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 41021074 - 41021127
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||| ||||||||| || | | |||||||||||||||| ||||||||||||||    
T  41021074 gggactaatttggccgacgcgtgaaaattcagggacgaatttgatggttcactc 41021127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 41977972 - 41977911
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||||| |||||||||| ||  ||| ||  |||||||||||| |||||||    
T  41977972 tttccatcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaagacaacaca 41977911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 45257291 - 45257352
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactcattaatta 286  Q
    |||| |||||||||| |||| | |||||||| | ||||| |||||||||||||| |||||||    
T  45257291 gggatgaatttggccgacccgtgaaaattcaagaacgaatttgatggttcactctttaatta 45257352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 48633929 - 48633876
Alignment:
Q  226 ggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactca 279  Q
    ||||||||||| || |||| | |||||||| ||||||| |||||||||||||||    
T  48633929 ggacgaatttgaccgacccgtgaaaattcaaggacgaatttgatggttcactca 48633876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 48635411 - 48635464
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    |||||||||||| || | || | ||||||||||||||||||||||| |||||||    
T  48635411 gggacgaatttgaccgatccgtgaaaattcagggacgaaattgatgattcactc 48635464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 45255515 - 45255475
Alignment:
Q  246 taaaaattcagggacgaaattgatggttcactcattaatta 286  Q
    |||||||||||||||||| |||||| |||| ||||||||||    
T  45255515 taaaaattcagggacgaagttgatgattcaatcattaatta 45255475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 48634099 - 48634051
Alignment:
Q  142 atcaatttagtccctgtacacgtggctttctttttcccacgtgtacaag 190  Q
    ||||| ||||||| || ||||||||||| |||||| |||||||||||||    
T  48634099 atcaaattagtccttgaacacgtggcttcctttttgccacgtgtacaag 48634051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 6705 - 6758
Alignment:
Q  225 gggacgaatttggccaacccctaaaaattcagggacgaaattgatggttcactc 278  Q
    ||||||||||||||| |||| | ||||||||||||| |||||||||||||||||    
T  6705 gggacgaatttggccgacccgtgaaaattcagggactaaattgatggttcactc 6758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 1485 - 1421
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacacagca 201  Q
    |||||||||||||||||| ||||||||||| |  ||| ||  |||||||||||| ||||||||||    
T  1485 tttccatcaatttagtccttgtacacgtggttgccttgttgacacgtgtacaagacaacacagca 1421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 8483 - 8422
Alignment:
Q  137 tttccatcaatttagtccctgtacacgtggctttctttttcccacgtgtacaagccaacaca 198  Q
    |||||||||||||||| | |||||||||||||  ||| ||  |||||||||||| |||||||    
T  8483 tttccatcaatttagtacttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 8422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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