View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_high_4 (Length: 439)
Name: NF10498_high_4
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 6285486 - 6285910
Alignment:
| Q |
1 |
aacacctggtggatttacctttgatataatatcaaataggtttaattcaatggcagattttaacacagaagtataaatcattggaccacaacaaagaagc |
100 |
Q |
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| T |
6285486 |
aacacctggtggatttgcctttgatataatatcaaataggtttaattcaattgcagattttaacacagaagtataaatcattggaccacaacaaagaagc |
6285585 |
T |
|
| Q |
101 |
atagcagagagacatgcatcatcatcttcttctacttcaaaaggtgaacattttggaagaacatgaatatcttcagaaatagatcccatgttttggtttc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6285586 |
atagcagagagacatgcatcatcatcttctactacttcaaaaggtgaacattttggaagaacatgaatatcttcagaaatagatcccatgttttggtttc |
6285685 |
T |
|
| Q |
201 |
ttttagttt--gagtttacaatgcatgttggtaacatgcatttatatcatatatgtattgatcttattggtgaaagttattacctatgttgtatatgttt |
298 |
Q |
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| T |
6285686 |
ttttagtttttgagtttacaatgcatgttggtaacatgcatttatatcatatatgtattgatcttattggtgaaagttattacctatgttgtatatgttt |
6285785 |
T |
|
| Q |
299 |
gtctttaagtgtgtgatgatgttggttgttttaacgtattgtacatcattagagattgacaaaaaatgactgtgactgcaatatacaatgtgttgtgaaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6285786 |
gtctttaagtgtgtgatgatgttggttgttttaacgtattgtacatcattagagattgacaaaaaatgactgtgactgcaatatacaatgtgttgtgaaa |
6285885 |
T |
|
| Q |
399 |
ttattggtgtatgtgcttttctttg |
423 |
Q |
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||||||||||||| ||||||||||| |
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| T |
6285886 |
ttattggtgtatgcgcttttctttg |
6285910 |
T |
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