View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10498_high_6 (Length: 316)
Name: NF10498_high_6
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 5415222 - 5414921
Alignment:
| Q |
9 |
acttgtaaattgtcattgttcagattttataatcagaagtgtgtttttaagtttgtatatcccaatttcgaaaaatcatgcaagtttctctcattttgag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
5415222 |
acttgtaaattgtcattgttcagattttataatcagaagtgtgtttttaagtttgtatatcccaatttccaaa--tcatgcaagtttctctcattttgaa |
5415125 |
T |
|
| Q |
109 |
gtggagtcggaaagtatatgtaataaagagaggatcaacactact--nnnnnnncactataataattgcaatggnnnnnnnnnnnnttggttaattccat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
5415124 |
gtggagtcggaaagtatatgtaataaagagaggatcaacactactacaaaaaaacattataataattgcaatggaaaaagaaaaaattggttaattccat |
5415025 |
T |
|
| Q |
207 |
tgtcactaaaaccagttacatatctagggagagacttcatatttcctacctctaaatagtctatnnnnnnngttaaaatatagaggtggtcatgttcact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5415024 |
tgtcactaaaaccagttacatatctagggagagacttcatatttcctacctctaaatagtctataaaaaaagttaaaatatagaggtggtcatgttcact |
5414925 |
T |
|
| Q |
307 |
gcat |
310 |
Q |
| |
|
|||| |
|
|
| T |
5414924 |
gcat |
5414921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University