View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_10 (Length: 374)
Name: NF10498_low_10
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 8882775 - 8883131
Alignment:
| Q |
1 |
aatgtctttatcagtgagacccatgcgataaaagatctctcttaaatgtgatgcgcctgaaatataatatatagtttttcatatgataaatgaaatactt |
100 |
Q |
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| T |
8882775 |
aatgtctttatcagtgagacccatgcgataaaagatctctcttaaatgtgatgcgcctgaaatataatatatagtttttcatatgataaatgaaatactt |
8882874 |
T |
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| Q |
101 |
attttaagtaattttgagttaagtttcaagattgaacaacatgatttaattaccttgtttggcatctggaaggcgaccttcttgtggagattctaatgaa |
200 |
Q |
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| T |
8882875 |
agtttaagtaattttgagttaagtttcaagattgaacaacatgatttaattaccttgtttggcatctggaaggcgaccttcttgtggagattccaatgaa |
8882974 |
T |
|
| Q |
201 |
tcctaattcaaaataaaacacctcatattactactataatagtataataaagatagattgttactgaaatcacgaggctaattaaacaaagcatgattag |
300 |
Q |
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| T |
8882975 |
tcctaattcaaaataaaacacctcatattactactataatagtataataaagatagattgttactgaaatcatgaggctaattaaacaaagcatgattag |
8883074 |
T |
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| Q |
301 |
tattgcattgaatgatgaatgtacctttcttccgggaacaaactgaatagttggacc |
357 |
Q |
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| T |
8883075 |
tattgcattgaatgatgaatgtacctttcttccgggaacaaactgaatagttggacc |
8883131 |
T |
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