View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_14 (Length: 357)
Name: NF10498_low_14
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 15733497 - 15733821
Alignment:
| Q |
16 |
agcagagaagcccaaagacgaagaagaagaattctccaacaaggatctgatcgtcttgccttcatcaagggtcacatccaaaccctccctcctcccggta |
115 |
Q |
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| T |
15733497 |
agcagagaagcccaaagacgaagaagaagaattctccaacaaggatctgatcgtcttgccttcatcaagggtcacatccaaaccctccctcctaccggta |
15733596 |
T |
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| Q |
116 |
cctttcttctttcattcaatcattcaattccaaaccctataattctgaaacttcaattttaatctatataannnnnnnngcagattttcaaaatcacgat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
15733597 |
cctttcttctttcattcaatcattcaattccaaaccctataattctgaaacttcaattttaatttatataattttttttgcagattttcaaaatcccgat |
15733696 |
T |
|
| Q |
216 |
gcttcggaaacaagcattacccatacacctacttttcctgaacaacaacacactcaaactgatgagattttaagtttcccagattctgaaattcaacctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15733697 |
gcttcggaaacaagcattacccatacacctacttttcctgaacaacaacacactcaaactgatgagattttaagtttcccagattctgaaattcaacctg |
15733796 |
T |
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| Q |
316 |
aacctgagcctgaacatgtacaact |
340 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
15733797 |
aacctgagcctgaacatgtacaact |
15733821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 1582664 - 1582340
Alignment:
| Q |
16 |
agcagagaagcccaaagacgaagaagaagaattctccaacaaggatctgatcgtcttgccttcatcaagggtcacatccaaaccctccctcctcccggta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1582664 |
agcagagaagcccaaagacgaagaagaagaattctccaacaaggatctgatcgtcttgccttcatcaagggtcacatccaaaccctccctcctaccggta |
1582565 |
T |
|
| Q |
116 |
cctttcttctttcattcaatcattcaattccaaaccctataattctgaaacttcaattttaatctatataannnnnnnngcagattttcaaaatcacgat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
1582564 |
cctttcttctttcattcaatcattcaattccaaaccctataattctgaaacttcaattttaatttatataattttttttgcagattttcaaaatcccgat |
1582465 |
T |
|
| Q |
216 |
gcttcggaaacaagcattacccatacacctacttttcctgaacaacaacacactcaaactgatgagattttaagtttcccagattctgaaattcaacctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1582464 |
gcttcggaaacaagcattacccatacacctacttttcctgaacaacaacacactcaaactgatgagattttaagtttcccagattctgaaattcaacctg |
1582365 |
T |
|
| Q |
316 |
aacctgagcctgaacatgtacaact |
340 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
1582364 |
aacctgagcctgaacatgtacaact |
1582340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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