View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_15 (Length: 356)
Name: NF10498_low_15
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 35902498 - 35902223
Alignment:
| Q |
17 |
agaccaaatagagtcgagatacatattttgcagtcaagcatcagctccaaatttagtcaaaacataatagctcatttacatctcattgttggtatcatag |
116 |
Q |
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| T |
35902498 |
agaccaaatagagtcgagatacatattt-gcagtcaagcatcagctccaaatctagtcaaaacataatagctcatttacatctcattgttggtgtcatag |
35902400 |
T |
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| Q |
117 |
tgcttcattggtgactcctccttccacgttatcatttataatggtacatgtatcaagcatagagnnnnnnngaactactgtttttgctaggttcaaagat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
35902399 |
tgcttcattggtgactcctccttccacgttatcatttataatggtacatgtatcaagcatagag-aaaaaagaactactttttttgctaggttcaaagat |
35902301 |
T |
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| Q |
217 |
gtcagggaattacagcttaatcatcaacatatactctaacattaagtccaaaaaatgctttagattgatccagcaatt |
294 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35902300 |
gtcaaggaattacagcttaatcatcaacatatactccaacattaagtccaaaaaatgcttcagattgatccagcaatt |
35902223 |
T |
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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 24820808 - 24820727
Alignment:
| Q |
81 |
taatagctcatttacatctcattgttggtatcatagtgcttcattggtgactcctccttccacgttatcatttataatggtac |
163 |
Q |
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| T |
24820808 |
taatagctcatttacctctcattgttggtgtcaaagtgcttcattggtgattcttccttccac-atatcatttatgatggtac |
24820727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 1161719 - 1161837
Alignment:
| Q |
28 |
agtcgagatacatattttgcagtcaagcatcagctccaaatttagtcaaaaca----taatagctcatttacatctcattgttggtatcatagtgcttca |
123 |
Q |
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| T |
1161719 |
agtcaagaaacatatttcccagtcaaacatcaactcctaatttagttaaaacaaaattaatagcttattttcctctcaccgttggtgtcatattgcttca |
1161818 |
T |
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| Q |
124 |
ttggtgactcctccttcca |
142 |
Q |
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||||||| || |||||||| |
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| T |
1161819 |
ttggtgattcttccttcca |
1161837 |
T |
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