View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10498_low_18 (Length: 329)
Name: NF10498_low_18
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 35574930 - 35575232
Alignment:
| Q |
18 |
cttatgtataaagtgctgaacataccgttttccatccaacaatacacttttaatgaaacaagtataaacactaccaattatgccatttggtaatttctca |
117 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
35574930 |
cttatgtataaagtgttgaacataccattttccatccaacaatacacttttaatgaaacaagtataaacagtaccaattatgccctttggtaatttctca |
35575029 |
T |
|
| Q |
118 |
tatgggttgtcattgtcttatctctt----atcggtgtatgctttcttccttgcagtacaataattagaggcagctcatttaaacttagtctcaaagtgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35575030 |
tatgggttgtcattgtcttatctcttgagaatcagtgtatgctttcttccttgtagtacagtaattagaggcagctcatttaaacttagtctcaaagtgt |
35575129 |
T |
|
| Q |
214 |
tgcaaacaagggacctaaattgctacacttgtatgagacataccgagagttcttcaatgacgcatcttctaaatctttttcagcgctgtatcttgtaaca |
313 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
35575130 |
tgcaaacaaggggcctaaatttctacacttgtatgagacataccgagagttcttcaatgacgcatcttcaaaatctttttcagcgctgcatcttgtaaca |
35575229 |
T |
|
| Q |
314 |
tct |
316 |
Q |
| |
|
||| |
|
|
| T |
35575230 |
tct |
35575232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University