View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_19 (Length: 325)
Name: NF10498_low_19
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_19 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 26733486 - 26733795
Alignment:
| Q |
16 |
agagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaagcatcacatgttatttgctac |
115 |
Q |
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| T |
26733486 |
agagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaaacatcacatgttatttgctac |
26733585 |
T |
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| Q |
116 |
tattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctnnnnnnntcaatgaaaggaaagaaagccaaagatga |
215 |
Q |
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| T |
26733586 |
tattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctaaaaaaatcaatgaaaggagagaaagccaaagatga |
26733685 |
T |
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| Q |
216 |
tgcactcaaagactggaaattttcaacttctgcttcagctcactgttcattttccggtgtaaaatgcgacgaagatcaacgtgtgattgctttgaacgtg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26733686 |
tgcactcaaagactggaaattttcaacttctgcttcagctcactgttcattttccggtgtaaaatgcgacgaagatcaacgtgtgattgctttgaacgtg |
26733785 |
T |
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| Q |
316 |
acgcaagttc |
325 |
Q |
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| T |
26733786 |
acgcaagttc |
26733795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 26725172 - 26725481
Alignment:
| Q |
16 |
agagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaagcatcacatgttatttgctac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26725172 |
agagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaacttagcaaaagagaaagatgaaaagcatcacatgttatttgctac |
26725271 |
T |
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| Q |
116 |
tattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctnnnnnnntcaatgaaaggaaagaaagccaaagatga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
26725272 |
tattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctaaaaaaatcaatgaaaggagagaaagccaaagatga |
26725371 |
T |
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| Q |
216 |
tgcactcaaagactggaaattttcaacttctgcttcagctcactgttcattttccggtgtaaaatgcgacgaagatcaacgtgtgattgctttgaacgtg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||| ||||||||| | |||||| |
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| T |
26725372 |
tgcactcaaagactggaaattttcaacttctgcttcaggtcactgttcattttccggtgtcaaatgcgacggagaacaacgagtgattgctctaaacgtg |
26725471 |
T |
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| Q |
316 |
acgcaagttc |
325 |
Q |
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|||||||||| |
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| T |
26725472 |
acgcaagttc |
26725481 |
T |
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