View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_2 (Length: 548)
Name: NF10498_low_2
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 62 - 534
Target Start/End: Complemental strand, 37937272 - 37936800
Alignment:
| Q |
62 |
cactaatggagcttagcaaagtaacactagagatattcacaaaactagaacaacaatggctatcagtttcacaatgtggaacaacatccaaaactcgcat |
161 |
Q |
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| T |
37937272 |
cactaatggagcttagcaaagtaacactagagatattcacaaaactagaacaacaatggctatcagtttcacaatgtggaacaacatccaaaactcgcat |
37937173 |
T |
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| Q |
162 |
tctcagcattgacggcggaggaaccaccgccattgtctccggcgctgccttgatccaccttgaggatcagatccgcttacaaaccaacgatcctcacgct |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937172 |
tctcagcattgacggcggaggaaccaccgccattgtctccggcgctgccttgatccaccttgaggatcagatccgcttacaaaccaacgatcctcacgct |
37937073 |
T |
|
| Q |
262 |
caaatcattgattactttgacatcatcaccggcactggcattggtgcaatactcgctgcaatgatcacagctgatgatggatttggtagacctctctata |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937072 |
caaatcattgattactttgacatcatcaccggcactggcattggtgcaatactcgctgcaatgatcacagctgatgatggatttggtagacctctctata |
37936973 |
T |
|
| Q |
362 |
ctgctagagatgctgtgaatttcattgctgacaggaatcatgaattctataaaatgaaatccgtcggtgttttccgccggcgccgtagattctcaacgaa |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37936972 |
ctgctagagatgctgtgaatttcattgctgacaggaatcatgaattctataaaatgaaatccgtcggtgttttccgccggcgccgtagattctcaacgaa |
37936873 |
T |
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| Q |
462 |
gagcattgaaaatttgttgaagcgagtttttcaaggaaaagaaagcgaaggtaaatctttgacgttgaaagat |
534 |
Q |
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| T |
37936872 |
gagcattgaaaatttgttgaagcgagtttttcaaggaaaagaaagcgaaggtaaatctttgacgttgaaagat |
37936800 |
T |
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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 149 - 329
Target Start/End: Original strand, 32039723 - 32039903
Alignment:
| Q |
149 |
ccaaaactcgcattctcagcattgacggcggaggaaccaccgccattgtctccggcgctgccttgatccaccttgaggatcagatccgcttacaaaccaa |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||| || || ||||||||||| | |||||| |
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| T |
32039723 |
ccaaaactcgcattctcagcattgacggcggaggaacaaccgccattgtagccggcgctgctttaatccatctcgaagatcagatccgtcttcaaacctc |
32039822 |
T |
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| Q |
249 |
cgatcctcacgctcaaatcattgattactttgacatcatcaccggcactggcattggtgcaatactcgctgcaatgatcac |
329 |
Q |
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| T |
32039823 |
tgatcctcacgctcacgtcgttgatttcttcgacattgtcgctggtaccggaattggcgctatcctcgctgcaatgatcac |
32039903 |
T |
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