View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_23 (Length: 314)
Name: NF10498_low_23
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_23 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 50804809 - 50805099
Alignment:
| Q |
8 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
107 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50804809 |
gagcagagactacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatct |
50804908 |
T |
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| Q |
108 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804909 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
50805008 |
T |
|
| Q |
208 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805009 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
50805099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 50871068 - 50870778
Alignment:
| Q |
8 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
107 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50871068 |
gagcagagactacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatct |
50870969 |
T |
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| Q |
108 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
207 |
Q |
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| T |
50870968 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
50870869 |
T |
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| Q |
208 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
298 |
Q |
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| T |
50870868 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
50870778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 19057379 - 19057089
Alignment:
| Q |
8 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
107 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057379 |
gagcagagaatacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
19057280 |
T |
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| Q |
108 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057279 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
19057180 |
T |
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| Q |
208 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatg |
298 |
Q |
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| T |
19057179 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagatatatg |
19057089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
77 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
167 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
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| Q |
168 |
cgtaggtagaaccatcttg |
186 |
Q |
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| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 11181 - 11241
Alignment:
| Q |
227 |
aaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtt |
287 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
11181 |
aaaaaaaaaacaacagatgaagaagttatttgctaaaggagtatttaaatataaaattgtt |
11241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 40705780 - 40705718
Alignment:
| Q |
222 |
tagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtt |
287 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
40705780 |
tagacaaaaaacaaacaa---atgaataagttatttgctaaaggagtatttaaatataaaactgtt |
40705718 |
T |
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