View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_27 (Length: 303)
Name: NF10498_low_27
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 45666422 - 45666696
Alignment:
| Q |
18 |
aatcctcttctcgtaggattcacccttatccacaatgcagctgctaaaggagcaggtactatactagtactagtactacctacaaacaatacagcacctt |
117 |
Q |
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|||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666422 |
aatcctcttctcgtaggactcacccttgttcacaatgcagctgctaaaggagcaggtactatactagtactagtactacctacaaacaatacagcacctt |
45666521 |
T |
|
| Q |
118 |
tctcctcctttcctctctaacattaaatatttt-ttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatca |
216 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666522 |
tctcctcctttcctctc-aacattaaatatttttttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatca |
45666620 |
T |
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| Q |
217 |
ggagcagacagttggcttgttaatttagaggtatttctacaccaaataatagtattaaggttgacgagtctttctt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666621 |
ggagcagacagttggcttgttaatttagaggtatttctacaccaaataatagtattaaggttgacgagtctttctt |
45666696 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 37973790 - 37973690
Alignment:
| Q |
150 |
tttgtttcttgcagtgtgcttggatggaacattacctggttaccatttgcaccgtggatatggatcaggagcagacagttggcttgttaatttagaggta |
249 |
Q |
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||||||| | ||||| ||||||||||||||||| |||| ||| ||||| | | ||||| ||||| || ||| |||| ||||||||||||||||||||| |
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| T |
37973790 |
tttgtttttggcagtctgcttggatggaacattgcctgcttatcattttgatcacggatacggatccggtgcaaacagctggcttgttaatttagaggta |
37973691 |
T |
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| Q |
250 |
t |
250 |
Q |
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| T |
37973690 |
t |
37973690 |
T |
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