View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_low_28 (Length: 299)

Name: NF10498_low_28
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_low_28
NF10498_low_28
[»] chr8 (2 HSPs)
chr8 (26-288)||(2319993-2320255)
chr8 (52-169)||(38544223-38544340)
[»] chr4 (2 HSPs)
chr4 (26-288)||(16990377-16990639)
chr4 (26-58)||(52720605-52720637)
[»] chr3 (8 HSPs)
chr3 (26-288)||(37241961-37242223)
chr3 (26-288)||(1258673-1258935)
chr3 (26-288)||(34873478-34873727)
chr3 (31-110)||(13809940-13810019)
chr3 (18-61)||(37242999-37243042)
chr3 (18-59)||(1259713-1259754)
chr3 (18-61)||(34872965-34873008)
chr3 (26-61)||(44445498-44445533)
[»] chr7 (3 HSPs)
chr7 (26-288)||(31234124-31234386)
chr7 (18-58)||(31235166-31235206)
chr7 (26-61)||(41236797-41236832)
[»] chr6 (1 HSPs)
chr6 (26-164)||(18246185-18246323)
[»] chr5 (3 HSPs)
chr5 (49-160)||(39087407-39087518)
chr5 (26-61)||(3135931-3135966)
chr5 (26-59)||(27645843-27645876)
[»] chr2 (1 HSPs)
chr2 (56-160)||(20040174-20040276)
[»] chr1 (4 HSPs)
chr1 (18-61)||(41466213-41466256)
chr1 (18-61)||(45320456-45320499)
chr1 (26-61)||(41465244-41465279)
chr1 (24-61)||(35972605-35972642)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 2320255 - 2319993
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320255 ttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 2320156  T
Q  126 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 225  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320155 atctcaatagcttcactttccaaatttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 2320056  T
Q  226 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 288  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2320055 agaaacaccaccaataattgaaacctctttaagtgtgtgaaacaaagcatgacttaccttcat 2319993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 38544340 - 38544223
Alignment:
Q  52 ccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaact 151  Q
    ||||||||||  ||||||||| |||||||||||||| || |||||||||| ||||||||| |||| |||| || ||   ||| | ||| | |||||||||    
T  38544340 ccaccatgggaaacacaagatcaatggttagattgtacacttctattaaatcttatcatgctctctcacacctaattctaatggtttctcattccaaact 38544241  T
Q  152 tttctcatcttgctccca 169  Q
    ||||||||||| ||||||    
T  38544240 tttctcatcttcctccca 38544223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 16990639 - 16990377
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 125  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990639 ttcatatgggaaggtataaaacctttccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 16990540  T
Q  126 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990539 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 16990440  T
Q  226 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990439 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 16990377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 52720605 - 52720637
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccat 58  Q
    |||||||||||||||||||||| ||||||||||    
T  52720605 ttcacatgggaaggtataaaacattcccaccat 52720637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 37241961 - 37242223
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 125  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37241961 ttcatatgggaaggtataaaaccttcctaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 37242060  T
Q  126 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242061 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 37242160  T
Q  226 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242161 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 37242223  T

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Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 1258673 - 1258935
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1258673 ttcacatgggaaggtataaaaccttcccaccatggatcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcccacatctg 1258772  T
Q  126 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1258773 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctctaggctccatctcccacaaccagcaaccaccttcaa 1258872  T
Q  226 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1258873 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 1258935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 34873727 - 34873478
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  34873727 ttcacatgggaaggtataaaaccttcccaccatggatcacacaagata------------gtgcatttctattaaagcttatcatgttctcccacatctg 34873640  T
Q  126 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 225  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34873639 atctcaatagcttcactttccaaacttttgtcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 34873540  T
Q  226 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 288  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  34873539 agaaacaccaccaataattgaaacct-tttaagtgggtgaaccaaagcatgacttaccttcat 34873478  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 13809940 - 13810019
Alignment:
Q  31 atgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcat 110  Q
    ||||||| | ||||||| || |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  13809940 atgggaaaggataaaacttttccaccatgggtcacacaagataaatggttacattgtgcacttctattaaagcttatcat 13810019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 37243042 - 37242999
Alignment:
Q  18 ggtggttgttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37243042 ggtggttgttcacatgggaaggtataaaaccttcccaccatggg 37242999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 1259754 - 1259713
Alignment:
Q  18 ggtggttgttcacatgggaaggtataaaaccttcccaccatg 59  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1259754 ggtggttgttcacatgggaaggtataaaaccttcccaccatg 1259713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 34872965 - 34873008
Alignment:
Q  18 ggtggttgttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  34872965 ggtggctgttcacatgggaaggtataaaaccttcccaccatggg 34873008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 44445498 - 44445533
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    ||||||||||||| ||||||||||||||||||||||    
T  44445498 ttcacatgggaagatataaaaccttcccaccatggg 44445533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 31234124 - 31234386
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 125  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  31234124 ttcatatgggaaggtataaaaccttcccaccatggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctcctacatctg 31234223  T
Q  126 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31234224 atctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggtcgtctccctccaggctccatctcccacaaccagcaaccaccttcaa 31234323  T
Q  226 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31234324 agaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat 31234386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 31235206 - 31235166
Alignment:
Q  18 ggtggttgttcacatgggaaggtataaaaccttcccaccat 58  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  31235206 ggtggctgttcacatgggaaggtataaaaccttcccaccat 31235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 41236797 - 41236832
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41236797 ttcacatgggaaggtgtaaaaccttcccaccatggg 41236832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 18246185 - 18246323
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 125  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246185 ttcacatgggaaggtataaaactttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctg 18246284  T
Q  126 atctcaatagcttcactttccaaacttttctcatcttgc 164  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18246285 atctcaatagcttcactttccaaacttttctcatcttgc 18246323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 39087518 - 39087407
Alignment:
Q  49 ttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa 148  Q
    |||||||||| | ||||| || ||||||||||||||| ||||||||||| ||| ||||||||||||||||||| || |||| ||| ||||| ||||||||    
T  39087518 ttcccaccatagatcacataaaataaatggttagattttgcatttctataaaaccttatcatgttctcccacacctaatcttaattgcttctctttccaa 39087419  T
Q  149 acttttctcatc 160  Q
    ||||||||||||    
T  39087418 acttttctcatc 39087407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 3135931 - 3135966
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    ||||||||||||||||||||||||||||||||||||    
T  3135931 ttcacatgggaaggtataaaaccttcccaccatggg 3135966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 27645843 - 27645876
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatg 59  Q
    ||||||||||||||| ||||||||||||||||||    
T  27645843 ttcacatgggaaggtgtaaaaccttcccaccatg 27645876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 20040276 - 20040174
Alignment:
Q  56 catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaacttttc 155  Q
    ||||| ||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| ||||  || ||||||||||||    
T  20040276 catggatcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggctt--ctctccaaacttttc 20040179  T
Q  156 tcatc 160  Q
    |||||    
T  20040178 tcatc 20040174  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 41466213 - 41466256
Alignment:
Q  18 ggtggttgttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  41466213 ggtggctgttcacatgggaaggtataaaaccttcccaccatggg 41466256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 45320456 - 45320499
Alignment:
Q  18 ggtggttgttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  45320456 ggtggctgttcacatgggaaggtataaaaccttcccaccatggg 45320499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 41465244 - 41465279
Alignment:
Q  26 ttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41465244 ttcacatgggaaggtgtaaaaccttcccaccatggg 41465279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 35972642 - 35972605
Alignment:
Q  24 tgttcacatgggaaggtataaaaccttcccaccatggg 61  Q
    |||||||||||||||||||||| | |||||||||||||    
T  35972642 tgttcacatgggaaggtataaagctttcccaccatggg 35972605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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