View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_low_29 (Length: 296)

Name: NF10498_low_29
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_low_29
NF10498_low_29
[»] chr4 (14 HSPs)
chr4 (1-281)||(35969475-35969755)
chr4 (19-281)||(36642259-36642525)
chr4 (23-270)||(36910721-36910978)
chr4 (146-273)||(18361185-18361312)
chr4 (146-273)||(36601616-36601744)
chr4 (19-270)||(36630482-36630747)
chr4 (163-281)||(36635747-36635865)
chr4 (12-136)||(36635588-36635709)
chr4 (39-136)||(18365527-18365624)
chr4 (39-136)||(36597301-36597398)
chr4 (13-89)||(18084409-18084485)
chr4 (231-279)||(18365378-18365426)
chr4 (231-279)||(36597498-36597546)
chr4 (13-89)||(36664524-36664600)
[»] chr1 (1 HSPs)
chr1 (151-279)||(42601686-42601814)
[»] chr8 (1 HSPs)
chr8 (151-274)||(35336924-35337047)
[»] chr5 (2 HSPs)
chr5 (231-279)||(19657217-19657265)
chr5 (231-279)||(19674061-19674109)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 35969755 - 35969475
Alignment:
Q  1 acgcggcaaactgcgaatgatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35969755 acgcggcaaactgcgaatgatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcacaaactcttcttatatttatt 35969656  T
Q  101 taatttaatattatctaacctcagattctcacaaaagttatcaccgctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969655 taatttaatattatctaacctcagattctcacaaaagttattaccgctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaa 35969556  T
Q  201 attgttaggatgttaacttccgccagcggtgagttttgtcgcaagaaatcaactattccatctggtatgggaggaggttcc 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969555 attgttaggatgttaacttccgccagcggtgagttttgtcgcaagaaatcaactattccatctggtatgggaggaggttcc 35969475  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 36642259 - 36642525
Alignment:
Q  19 gatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttatatttatttaatttaatattatctaa 118  Q
    ||||| |||| ||| | ||||||||||||||||||  |||||| ||| |||||  |||||| |||||||||||||  || ||| |||| | | |||||||    
T  36642259 gatagctgatgatcttagcgccctttatagattctacaacctgcttagtaacaaacaatcacaaactcttcttatggttgtttcatttgaaactatctaa 36642358  T
Q  119 cctcagattctcacaaaagttatcacc----gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgtt 214  Q
     || ||||||||| || | ||| |||     |||| ||||||| ||| ||||||| |||| |||||||||||||||||  ||||||  ||| | ||||||    
T  36642359 gctgagattctcaaaagaattaccacactcagctcccttatggattttaaataacaacctgcttaagattaaaacaatccgagtaatctgtaaagatgtt 36642458  T
Q  215 aacttccgccagcggtgagttttgtcgcaagaaatcaactattccatctggtatgggaggaggttcc 281  Q
    |||||||||   ||||||||||||||||||||| || ||||||||||  ||||||| ||| ||||||    
T  36642459 aacttccgcagacggtgagttttgtcgcaagaagtctactattccattaggtatggcaggtggttcc 36642525  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 36910978 - 36910721
Alignment:
Q  23 gttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttatatttatttaatttaatattatctaacctc 122  Q
    |||||||||| | ||||||||||||||||||  |||||||||| |||||  |||| | |||||||||||||  || | | |||||| ||||||||| |||    
T  36910978 gttgataatcttcgcgccctttatagattctacaacctgtttagtaacaaccaattacaaactcttcttatggttgtgtcatttaaaattatctaagctc 36910879  T
Q  123 agattctca--caaaagttatca----ccgctcacttatggttttcaaataa----ctacctccttaagattaaaacaatttgagtaaattgttaggatg 212  Q
    |||||||||   |||| ||| ||    | |||| | ||||||||| ||||||    |||||| ||||||||||||| || |  |||||  ||||  ||||    
T  36910878 agattctcaacaaaaaattaacacactcagctcccatatggtttttaaataactagctacctgcttaagattaaaataaataaagtaatctgttgtgatg 36910779  T
Q  213 ttaacttccgccagcggtgagttttgtcgcaagaaatcaactattccatctggtatgg 270  Q
    |||||||||||    || ||||||||||||||||| |||||||||||||| |||||||    
T  36910778 ttaacttccgctgagggcgagttttgtcgcaagaagtcaactattccatcaggtatgg 36910721  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 273
Target Start/End: Complemental strand, 18361312 - 18361185
Alignment:
Q  146 gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaag 245  Q
    |||| |||||||||||||||||||||| | |||||||||||| ||||| || |||  ||||| |||||||||||  |||  |||||| |||| | |||||    
T  18361312 gctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaatttttttgcaag 18361213  T
Q  246 aaatcaactattccatctggtatgggag 273  Q
    || |||||||||||||| ||||||||||    
T  18361212 aagtcaactattccatcaggtatgggag 18361185  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 36601616 - 36601744
Alignment:
Q  146 gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtg-agttttgtcgcaa 244  Q
    |||| |||||||||||||||||||||| | |||||||||||| ||||| || |||  ||||| |||||||||||  |||  ||||| | |||| | ||||    
T  36601616 gctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaattttttttgcaa 36601715  T
Q  245 gaaatcaactattccatctggtatgggag 273  Q
    ||| |||||||||||||| ||||||||||    
T  36601716 gaagtcaactattccatcaggtatgggag 36601744  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 36630747 - 36630482
Alignment:
Q  19 gatagttgataatcctggcgccctttatagattctttaacctgtttaataa-------cagtcaatcataaactcttcttatatttatttaatttaatat 111  Q
    |||||||||||||| |  | |||||||||||||||| |||||||||| |||       ||  |||||| |||||||||||||   | ||| |||||| ||    
T  36630747 gatagttgataatcttctcaccctttatagattcttcaacctgtttagtaattagtatcaaccaatcacaaactcttcttatggctgtttcatttaaaat 36630648  T
Q  112 tatctaacctcagattctcacaaaagttatcacc-------gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattg 204  Q
    ||||||| || ||||| ||| |||| | || |||       |||| ||||||  ||| |||||||||||| ||||||||||||||||  || ||||  ||    
T  36630647 tatctaagcttagattgtcaaaaaaataattaccacacttggctcccttatgacttttaaataactacctgcttaagattaaaacaacctgggtaatctg 36630548  T
Q  205 ttaggatgttaacttccgccagcggtgagttttgtcgcaagaaatcaactattccatctggtatgg 270  Q
    ||  |||||||||||| |||  ||  | ||||||||||||||| |||||||||||||| |||||||    
T  36630547 ttgtgatgttaacttcagccgacgacgggttttgtcgcaagaagtcaactattccatcaggtatgg 36630482  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 36635747 - 36635865
Alignment:
Q  163 aaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaagaaatcaactattccatc 262  Q
    |||||||||||| ||||||||||||||||   | |||| |||||  |||||||||||| ||     | |||||||| |||||||| ||||||||||||||    
T  36635747 aaataactacctgcttaagattaaaacaagccgggtaatttgttgtgatgttaacttcggcggattgcgagttttgacgcaagaattcaactattccatc 36635846  T
Q  263 tggtatgggaggaggttcc 281  Q
     ||||||||||| ||||||    
T  36635847 aggtatgggaggtggttcc 36635865  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 36635588 - 36635709
Alignment:
Q  12 tgcgaatgatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttatatttatttaatttaatat 111  Q
    ||||||||||||||||||| | | || |||||||||||||||| ||||||||||  | ||  |||||| ||||   ||||||  || ||| |||||| ||    
T  36635588 tgcgaatgatagttgataaccttcgcaccctttatagattcttcaacctgtttagcagcaaccaatcacaaac---tcttatcgttgtttcatttaaaat 36635684  T
Q  112 tatctaacctcagattctcacaaaa 136  Q
    ||||||| || ||||||||| ||||    
T  36635685 tatctaagcttagattctcaaaaaa 36635709  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 18365624 - 18365527
Alignment:
Q  39 ccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttatatttatttaatttaatattatctaacctcagattctcacaaaa 136  Q
    |||||||| ||||||| |||||||||| |||||  |||||| |||||||||||||  || || ||||| |  ||||| || |||||||||||| ||||    
T  18365624 ccctttatggattcttcaacctgtttagtaacaaccaatcacaaactcttcttatggttgttaaatttgaatttatcaaagctcagattctcaaaaaa 18365527  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 36597301 - 36597398
Alignment:
Q  39 ccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttatatttatttaatttaatattatctaacctcagattctcacaaaa 136  Q
    |||||||| ||||||| |||||||||| |||||  |||||| |||||||||||||  || || ||||| |  ||||| || |||||||||||| ||||    
T  36597301 ccctttatggattcttcaacctgtttagtaacaaccaatcacaaactcttcttatggttgttaaatttgaatttatcaaagctcagattctcaaaaaa 36597398  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 18084485 - 18084409
Alignment:
Q  13 gcgaatgatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttc 89  Q
    ||||| ||||| |||| ||| | || |||||||||||||||  |||||||||| |||||| |||||| |||||||||    
T  18084485 gcgaacgatagctgatgatcttcgcaccctttatagattctgcaacctgtttagtaacagccaatcacaaactcttc 18084409  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 18365426 - 18365378
Alignment:
Q  231 gagttttgtcgcaagaaatcaactattccatctggtatgggaggaggtt 279  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||| ||||    
T  18365426 gagttttgtcgcaggaagtcaactattccatcaggtatgggaggtggtt 18365378  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 36597498 - 36597546
Alignment:
Q  231 gagttttgtcgcaagaaatcaactattccatctggtatgggaggaggtt 279  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||| ||||    
T  36597498 gagttttgtcgcaggaagtcaactattccatcaggtatgggaggtggtt 36597546  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 36664524 - 36664600
Alignment:
Q  13 gcgaatgatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttc 89  Q
    ||||| ||||| |||| ||| | || |||||||||||||||  |||||||||| |||||| |||||| |||||||||    
T  36664524 gcgaacgatagctgatgatcttcgcaccctttatagattctgcaacctgtttagtaacagccaatcacaaactcttc 36664600  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 42601686 - 42601814
Alignment:
Q  151 cttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaagaaatc 250  Q
    ||||||||||| |||||||||||| |||||||| |||| || | | ||||  ||||| ||| ||||||||| ||  |||  |||||||||||||||||||    
T  42601686 cttatggtttttaaataactacctgcttaagatcaaaagaactcgggtaatctgttaagattttaacttccaccgacggcaagttttgtcgcaagaaatc 42601785  T
Q  251 aactattccatctggtatgggaggaggtt 279  Q
    |||||||||||| ||||||||||| ||||    
T  42601786 aactattccatcgggtatgggaggtggtt 42601814  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 35337047 - 35336924
Alignment:
Q  151 cttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaagaaatc 250  Q
    ||||||||||| ||| |||||||| ||||| ||||||| ||   | |||  |||||  ||||||||||| ||||  ||||||||||||| ||||||| ||    
T  35337047 cttatggtttttaaacaactacctgcttaatattaaaataacccgtgtactttgttgtgatgttaactttcgccgacggtgagttttgttgcaagaagtc 35336948  T
Q  251 aactattccatctggtatgggagg 274  Q
    |||||||||||| |||||||||||    
T  35336947 aactattccatcaggtatgggagg 35336924  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 19657217 - 19657265
Alignment:
Q  231 gagttttgtcgcaagaaatcaactattccatctggtatgggaggaggtt 279  Q
    ||||||||  |||||||  ||||||||||||||||||||||||| ||||    
T  19657217 gagttttgaagcaagaaggcaactattccatctggtatgggaggtggtt 19657265  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 19674061 - 19674109
Alignment:
Q  231 gagttttgtcgcaagaaatcaactattccatctggtatgggaggaggtt 279  Q
    ||||||||  |||||||  ||||||||||||||||||||||||| ||||    
T  19674061 gagttttgaagcaagaaggcaactattccatctggtatgggaggtggtt 19674109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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