View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_low_30 (Length: 296)

Name: NF10498_low_30
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_low_30
NF10498_low_30
[»] chr2 (18 HSPs)
chr2 (87-279)||(9674954-9675146)
chr2 (88-279)||(19161588-19161779)
chr2 (87-279)||(23484743-23484935)
chr2 (88-279)||(20142545-20142736)
chr2 (88-279)||(27502473-27502663)
chr2 (121-279)||(17344782-17344940)
chr2 (88-264)||(4412886-4413062)
chr2 (88-264)||(41867728-41867904)
chr2 (147-212)||(18744826-18744891)
chr2 (151-264)||(28225174-28225287)
chr2 (147-279)||(13146939-13147071)
chr2 (88-279)||(3825838-3826029)
chr2 (147-236)||(10579627-10579716)
chr2 (88-279)||(9685220-9685411)
chr2 (147-264)||(44686589-44686705)
chr2 (88-194)||(5532530-5532636)
chr2 (163-236)||(16351687-16351760)
chr2 (8-40)||(9674823-9674855)
[»] chr5 (17 HSPs)
chr5 (88-243)||(32269638-32269793)
chr5 (111-279)||(35310582-35310750)
chr5 (147-264)||(27336863-27336980)
chr5 (88-243)||(33691896-33692051)
chr5 (111-264)||(43129668-43129820)
chr5 (147-264)||(13166730-13166846)
chr5 (147-264)||(38446336-38446453)
chr5 (98-243)||(3114005-3114149)
chr5 (148-264)||(433463-433579)
chr5 (120-279)||(26212387-26212547)
chr5 (171-243)||(34335531-34335603)
chr5 (147-266)||(9841144-9841264)
chr5 (147-243)||(15291867-15291963)
chr5 (88-192)||(14423789-14423893)
chr5 (178-264)||(6534383-6534469)
chr5 (147-232)||(27355568-27355653)
chr5 (163-243)||(7716362-7716442)
[»] chr8 (12 HSPs)
chr8 (111-264)||(35739807-35739959)
chr8 (147-279)||(39434837-39434969)
chr8 (88-274)||(24125139-24125325)
chr8 (130-243)||(25021655-25021768)
chr8 (112-243)||(500362-500493)
chr8 (111-218)||(10189677-10189784)
chr8 (153-196)||(40839727-40839770)
chr8 (147-214)||(3188139-3188206)
chr8 (147-218)||(11611115-11611185)
chr8 (87-236)||(42921975-42922124)
chr8 (147-243)||(37517264-37517360)
chr8 (171-210)||(38815478-38815517)
[»] chr6 (13 HSPs)
chr6 (88-264)||(34304607-34304783)
chr6 (87-279)||(12401441-12401633)
chr6 (88-264)||(357537-357713)
chr6 (98-243)||(4206437-4206582)
chr6 (87-264)||(32115799-32115976)
chr6 (110-229)||(959713-959832)
chr6 (111-244)||(33220551-33220684)
chr6 (163-279)||(45474-45590)
chr6 (147-243)||(29337924-29338020)
chr6 (147-229)||(28543545-28543627)
chr6 (147-264)||(20693421-20693537)
chr6 (148-197)||(34415607-34415656)
chr6 (149-190)||(17249199-17249240)
[»] chr1 (14 HSPs)
chr1 (87-264)||(34644676-34644853)
chr1 (87-279)||(28040932-28041124)
chr1 (147-264)||(37932038-37932155)
chr1 (88-264)||(19035558-19035734)
chr1 (147-279)||(29169599-29169731)
chr1 (88-236)||(45659495-45659644)
chr1 (147-279)||(4861794-4861926)
chr1 (111-267)||(38731714-38731870)
chr1 (110-240)||(42919992-42920122)
chr1 (111-245)||(25375672-25375806)
chr1 (147-267)||(37200152-37200270)
chr1 (183-242)||(22375479-22375538)
chr1 (153-220)||(35387181-35387248)
chr1 (147-187)||(22347063-22347103)
[»] chr4 (20 HSPs)
chr4 (147-279)||(50000730-50000862)
chr4 (88-274)||(31847198-31847384)
chr4 (147-264)||(3330120-3330237)
chr4 (98-279)||(53170628-53170803)
chr4 (88-243)||(132496-132653)
chr4 (171-264)||(6865633-6865726)
chr4 (87-279)||(26521598-26521790)
chr4 (163-274)||(16957722-16957833)
chr4 (147-229)||(25504463-25504545)
chr4 (151-264)||(25706683-25706796)
chr4 (149-243)||(12053583-12053677)
chr4 (147-229)||(53619756-53619838)
chr4 (149-243)||(56461948-56462042)
chr4 (147-264)||(30940559-30940676)
chr4 (171-264)||(12918192-12918285)
chr4 (163-236)||(18534586-18534659)
chr4 (111-215)||(53098541-53098644)
chr4 (147-196)||(54927626-54927675)
chr4 (146-236)||(9815709-9815798)
chr4 (173-243)||(55933303-55933373)
[»] chr3 (15 HSPs)
chr3 (88-279)||(39583034-39583225)
chr3 (98-279)||(52741316-52741497)
chr3 (88-236)||(53785820-53785968)
chr3 (128-243)||(29861948-29862063)
chr3 (109-264)||(49018095-49018250)
chr3 (130-264)||(37992485-37992619)
chr3 (88-197)||(13582620-13582729)
chr3 (88-193)||(7900969-7901074)
chr3 (147-245)||(54508224-54508321)
chr3 (88-184)||(35236317-35236413)
chr3 (147-218)||(7501877-7501948)
chr3 (88-210)||(44198878-44199000)
chr3 (147-264)||(52411722-52411839)
chr3 (98-190)||(38146177-38146269)
chr3 (147-214)||(5338817-5338884)
[»] chr7 (18 HSPs)
chr7 (88-264)||(5825382-5825558)
chr7 (147-279)||(28517092-28517224)
chr7 (147-279)||(45613647-45613779)
chr7 (87-214)||(4501368-4501495)
chr7 (88-279)||(983060-983251)
chr7 (88-264)||(3676750-3676927)
chr7 (111-243)||(43857008-43857140)
chr7 (88-213)||(21326709-21326834)
chr7 (147-243)||(19277463-19277559)
chr7 (88-185)||(22198097-22198194)
chr7 (88-185)||(22239627-22239724)
chr7 (147-264)||(47679295-47679412)
chr7 (154-243)||(10905282-10905369)
chr7 (157-262)||(38596635-38596740)
chr7 (163-245)||(38839513-38839594)
chr7 (98-189)||(32584722-32584813)
chr7 (98-213)||(24527710-24527826)
chr7 (111-202)||(27521605-27521694)
[»] scaffold1768 (1 HSPs)
scaffold1768 (88-214)||(54-180)
[»] scaffold0148 (1 HSPs)
scaffold0148 (111-243)||(33383-33517)
[»] scaffold0110 (1 HSPs)
scaffold0110 (147-236)||(47387-47476)
[»] scaffold0186 (1 HSPs)
scaffold0186 (172-243)||(19916-19987)
[»] scaffold0490 (1 HSPs)
scaffold0490 (88-186)||(6445-6542)
[»] scaffold0224 (1 HSPs)
scaffold0224 (110-240)||(18209-18339)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 87 - 279
Target Start/End: Original strand, 9674954 - 9675146
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    ||||||||| |||||||||||| |||||||||||||||||||| || |||||||  ||| ||||||||||||||||||||||  | ||||||||||||||    
T  9674954 tttgacgcatattttagggctatttgtcctaccataaaaggtctgatccctaatcccatgagtggtgaaaccccaatcaagttcatacatgcatgttttc 9675053  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  9675054 ctcctactcattcgtacatcataacatctgcatgtctaagtgtcgatcttttatttaatcggtcggtcagaaagttcacaggcgcctcattct 9675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 19161779 - 19161588
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    |||||||||||||||||| |   ||||||||||||||||| | |||  ||||| |||  ||||||||||||| | |||||||||||||||||||||||||    
T  19161779 ttgacgcagattttagggatgtatgtcctaccataaaaggcctgacatctaatctcacaagtggtgaaaccctattcaagtctacacatgcatgttttcc 19161680  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||||||||| | |||||||||||||| ||||| || ||||| |||||| |||||||| |||| || || | ||||| ||||||||| ||||    
T  19161679 tcctacccatccttacatcataacatccgcatgcctgagtgttgatcttctatctaatgggtcagttaggacgttcacagacgcctccttct 19161588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 87 - 279
Target Start/End: Complemental strand, 23484935 - 23484743
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    ||||||| || ||||||||||| |||||| ||| | ||||| ||||| | ||||  ||  ||||||||||||||||||||||||||||||||||||||||    
T  23484935 tttgacgtagcttttagggctagttgtcccaccgttaaaggcccgacacttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttc 23484836  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    ||||||||||| ||||||||||||||| ||||||  | ||||| |||||| ||| || | ||||  |||| ||||||| ||||||||| ||||    
T  23484835 ctcctacccatccgtacatcataacatatgcatgcttgagtgttgatcttctatatagtaggtcaatcaggaagttcacagacgcctccttct 23484743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 20142736 - 20142545
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    |||||| || |||||| ||| | ||||||||  |||||||| |||| ||||||  ||  ||||||||| ||||||||||||||||||| |||||||||||    
T  20142736 ttgacgaagcttttagagctgcctgtcctacggtaaaaggtacgacacctaatcccacaagtggtgaagccccaatcaagtctacacaagcatgttttcc 20142637  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
     ||||||||| |||||| |||||  |||||| || | ||||| |||||| |||||| | |||| ||||| ||||||||||||||||| ||||    
T  20142636 acctacccatccgtacaccataatgtctgcaggtttgagtgttgatcttctatctactgggtcagtcaggaagttcatagacgcctccttct 20142545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 88 - 279
Target Start/End: Original strand, 27502473 - 27502663
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||| || |||||||| | |||||| || |||||||||   ||  ||||||||||||||| ||| ||| |||||||||||||||||    
T  27502473 ttgacgcagcttttagggtta-ttgtcctatcgtaaaagctctgacccctaaacccacaagtggtgaaaccccattcaggtccacacatgcatgttttcc 27502571  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    ||| |||||| |||||| ||||||||| ||| | |||||||||||||||  ||||| | |||| ||||||||||||| || |||||| ||||    
T  27502572 tccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttgcatctagtgggtcagtcagaaagttcacaggcgcctccttct 27502663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 121 - 279
Target Start/End: Original strand, 17344782 - 17344940
Alignment:
Q  121 taaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatg 220  Q
    ||||||||| ||| ||||||  ||  ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  17344782 taaaaggtctgacacctaatcccacaagttgtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatccgcatg 17344881  T
Q  221 tctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
     || ||||| |||||| | ||||   |||| ||||||||||||| || |||||| ||||    
T  17344882 cctgagtgttgatcttctttctagcgggtcagtcagaaagttcacaggcgcctccttct 17344940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 4413062 - 4412886
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||| ||| |||||||| | | ||||||||  ||||||||| ||| | ||||  ||  ||||||||||||||| ||||||||||||| |||||||||||    
T  4413062 ttgacacagcttttagggttgcctgtcctacggtaaaaggtctgacacttaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttttcc 4412963  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
     ||||||||| |||||| ||||||||| ||| | || ||||| |||||| |||||| | |||| ||||| |||||||    
T  4412962 acctacccatccgtacaccataacatccgcaggcctgagtgttgatcttctatctagtgggtcagtcaggaagttca 4412886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 41867904 - 41867728
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| ||||| |||| | |||||||| |||||||||||||| ||||||  ||  ||| |||||| | || ||||||||||||| |||||||||||    
T  41867904 ttgacgcagcttttaaggctgcctgtcctacgataaaaggtccgacacctaatcccacaagtcgtgaaatctcagtcaagtctacacaagcatgttttcc 41867805  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
     |||||||||  ||||| ||||||||| ||| | || ||||| |||||| |||||| | |||| ||||| |||||||    
T  41867804 acctacccatctgtacaccataacatccgcaggcctgagtgttgatcttctatctagtgggtcagtcaggaagttca 41867728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 18744891 - 18744826
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataaca 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  18744891 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataaca 18744826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 28225174 - 28225287
Alignment:
Q  151 gtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtc 250  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||| |||||| ||||||||| | | | |||||||||||| || |||||| | |||     
T  28225174 gtgaaaccccattcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgtaggcctaagtgtcgatattctatctagtgggta 28225273  T
Q  251 ggtcagaaagttca 264  Q
     |||||||||||||    
T  28225274 agtcagaaagttca 28225287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 13147071 - 13146939
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    |||||||||||| || ||||||  |||||| | ||||||| |||||||||| |||||| |||||||||| |||| |||| |||||||||| |||||| |     
T  13147071 agtggtgaaaccacagtcaagttcacacatccgtgttttcttcctacccatgcgtacaccataacatctacatgcctaaatgtcgatcttctatctagtg 13146972  T
Q  247 ggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||   |||| ||||||| ||||||||||||||    
T  13146971 ggttaatcaggaagttcacagacgcctcattct 13146939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 279
Target Start/End: Original strand, 3825838 - 3826029
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| ||||||||||   |||| |||| ||||||  | ||||||||||  ||  || ||||||||| |||||||||| ||||||||||||||| |    
T  3825838 ttgacgcagcttttagggctctctgtcataccgtaaaagtcctgacccctaatcccacaaggggtgaaacctcaatcaagtccacacatgcatgtttttc 3825937  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||||| |||| ||||| | |||||||  || |  |||  ||||||||| |||||| | |||| ||||||||||||| ||| ||||| ||||    
T  3825938 tcctactcatttgtacaccttaacatccacaagcataaaggtcgatcttctatctagtgggtcagtcagaaagttcacagatgcctctttct 3826029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 10579716 - 10579627
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatctt 236  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||||| |||||||| ||   | |||||||||||||||    
T  10579716 agtggtgaaaccccagtcaagtccacaaatgcatgttttcctcctacccactcgtacaccataacatttgttggcctaagtgtcgatctt 10579627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 9685411 - 9685220
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||| |||||||||||| | | ||||||  ||||||||| ||| ||||||  ||  ||||||||||||||| |||||||||||||  ||||||||||    
T  9685411 ttgacgcggattttagggctgcctatcctacggtaaaaggtctgacacctaatcccacaagtggtgaaaccccagtcaagtctacacaatcatgttttcc 9685312  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
     |||||||||  | ||| |||||  | |||| | || ||||| || ||| |||||| | |||| ||||| ||||||| ||| ||||| ||||    
T  9685311 acctacccatatgcacaccataatgtttgcaggcctgagtgttgaccttctatctagtgggtcagtcaggaagttcacagaagcctccttct 9685220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 44686589 - 44686705
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||| |  |||| ||||| ||||||||| ||| | ||||||||| ||||| |||||| |     
T  44686589 agtggtgaaaccccagtcaagtccacacatgcatgttttcgtcc-aaacatttgtacaccataacatccgcaggcctaagtgtcaatcttctatctagta 44686687  T
Q  247 ggtcggtcagaaagttca 264  Q
    | || |||| ||||||||    
T  44686688 gatcagtcacaaagttca 44686705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 5532530 - 5532636
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||||| | ||||||||| |||||   ||||||||||||   || ||||||||||| ||  | ||||  ||||||||||||||| |    
T  5532530 ttgacgcagcttttagggctgcatgtcctaccgtaaaatccccgacccctaatcctatgagtggtgaaactccggttaagttcacacatgcatgtttttc 5532629  T
Q  188 tcctacc 194  Q
    |||||||    
T  5532630 tcctacc 5532636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 16351760 - 16351687
Alignment:
Q  163 tcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatctt 236  Q
    ||||||||||||||||||||| || ||| ||||||||||| | |||||||| | ||  ||||||||| ||||||    
T  16351760 tcaagtctacacatgcatgttgtcttccaacccattcgtataccataacatttacagatctaagtgttgatctt 16351687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 9674823 - 9674855
Alignment:
Q  8 aaatgatactaggacacattatatcttgatagt 40  Q
    ||||||||| |||||||||||||||||||||||    
T  9674823 aaatgatacaaggacacattatatcttgatagt 9674855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 243
Target Start/End: Complemental strand, 32269793 - 32269638
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    |||| |||| |||||||| | | ||||||||||||||||| ||||| ||||||| ||  ||||||||||||||| |||||||||||||||||||||||||    
T  32269793 ttgatgcagcttttagggttgcatgtcctaccataaaaggcccgacacctaattccagaagtggtgaaaccccagtcaagtctacacatgcatgttttcc 32269694  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    |||||||||| |||||| |||||||||||||  | | ||||| |||||| ||||||    
T  32269693 tcctacccatccgtacaccataacatctgcagatttgagtgttgatcttctatcta 32269638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 279
Target Start/End: Original strand, 35310582 - 35310750
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    ||||||||| ||||||  |||||||||||   ||  ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  35310582 tgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcctccaacccatccgtacatcataa 35310681  T
Q  211 catctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||| ||| | |||||||| |||||| |||||| | |||| || || ||||||| || |||||| ||||    
T  35310682 catccgcaagcctaagtgttgatcttctatctagtgggtcagttaggaagttcacaggcgcctccttct 35310750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 27336863 - 27336980
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||| ||||||||| ||| | ||||||||||||||| |||||| |     
T  27336863 agtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtg 27336962  T
Q  247 ggtcggtcagaaagttca 264  Q
    |||| |||||||||||||    
T  27336963 ggtcagtcagaaagttca 27336980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 243
Target Start/End: Complemental strand, 33692051 - 33691896
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| ||||||| || | ||||||||| ||||||  |||||||||||   ||  |||||||||||| || ||||||| |||||||||||||||||    
T  33692051 ttgacgcagcttttaggcctgcctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttcc 33691952  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||| |||||| |||||| |||||||| |||| |  |||||||||||||| ||||||    
T  33691951 tccaacccatccgtacaccataacatttgcaggcttaagtgtcgatcttctatcta 33691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 111 - 264
Target Start/End: Original strand, 43129668 - 43129820
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    ||||| ||| |||||| |||||||||||||   |  ||||||||||||||| |||| |  |||||||||| ||||||||||| |||| ||||||||||||    
T  43129668 tgtccaaccgtaaaagttccgacccctaatccaacaagtggtgaaaccccagtcaatttcacacatgcat-ttttcctcctatccatccgtacatcataa 43129766  T
Q  211 catctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    |||||||||| ||||||||||||||| |||||| | | || || ||||||||||    
T  43129767 catctgcatgcctaagtgtcgatcttctatctagtagatcagtaagaaagttca 43129820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 13166846 - 13166730
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||| | ||||||| |||||||||||||||||||| |||||| |||| | ||||||||| |||||  |||||||||||||| |||||| |     
T  13166846 agtggtgaaaccc-agtcaagtccacacatgcatgttttcctccaacccatccgtagaccataacatccgcatgcttaagtgtcgatcttctatctagtg 13166748  T
Q  247 ggtcggtcagaaagttca 264  Q
    |||| |||||||||||||    
T  13166747 ggtcagtcagaaagttca 13166730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 38446336 - 38446453
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    |||||||||||| || ||||||| ||||||||||||||| |||| |||||| |||||| |||||||| |||||| |||||||||||| || ||||||       
T  38446336 agtggtgaaacctcagtcaagtccacacatgcatgttttactccaacccatccgtacaccataacatttgcatgcctaagtgtcgatattctatctagag 38446435  T
Q  247 ggtcggtcagaaagttca 264  Q
    |||| |||||||| ||||    
T  38446436 ggtcagtcagaaaattca 38446453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 3114149 - 3114005
Alignment:
Q  98 ttttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccat 197  Q
    |||||||||| | ||||||||| ||||||  ||||||||||||  ||| ||||||||||  |   ||||||||||| |||  ||||| |||| |||||||    
T  3114149 ttttagggctgcctgtcctaccgtaaaagccccgacccctaatcccatgagtggtgaaatactggtcaagtctacaaatgagtgttt-cctcttacccat 3114051  T
Q  198 tcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    | ||||| ||||||||||||||| |||||||| |||||| ||||||    
T  3114050 ttgtacaccataacatctgcatgactaagtgttgatcttctatcta 3114005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 433463 - 433579
Alignment:
Q  148 gtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcg 247  Q
    |||||||||||||  ||||||| |||||||||| ||||||||| ||||||  ||||| ||||||||| ||||| |||||||| |||||| ||| || | |    
T  433463 gtggtgaaaccccggtcaagtccacacatgcatattttcctccaacccatctgtacaccataacatccgcatgcctaagtgtggatcttctatttagtgg 433562  T
Q  248 gtcggtcagaaagttca 264  Q
    | | |||||||||||||    
T  433563 gccagtcagaaagttca 433579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 26212547 - 26212387
Alignment:
Q  120 ataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgtttt-cctcctacccattcgtacatcataacatctgca 218  Q
    ||||||||||| || |||||| |||  |||| |||||||||| |||| ||||||||||||| |||| || |||| |||  |||||| ||| |||||||||    
T  26212547 ataaaaggtccaacacctaatctcacaagtgatgaaaccccagtcaaatctacacatgcatttttttccacctagccacccgtacaccatcacatctgca 26212448  T
Q  219 tgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    || || ||||| |||||| |||||| | |||| ||||| ||||||| || |||||| ||||    
T  26212447 tgcctgagtgttgatcttctatctagtgggtcagtcaggaagttcacaggcgcctccttct 26212387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 34335531 - 34335603
Alignment:
Q  171 acacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||||||||||||||||||||||| |||| ||||| |||||||| |||| | ||||||||||||||| ||||||    
T  34335531 acacatgcatgttttcctcctactcatttgtacaccataacatatgcaagcctaagtgtcgatcttctatcta 34335603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 9841264 - 9841144
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccat-tcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaat 245  Q
    ||||||||||||| | |||||| |||||| ||||||||| || ||||||||  || ||| ||||||||| ||| | ||||||||||||||| |||||| |    
T  9841264 agtggtgaaaccctactcaagtttacacacgcatgtttttcttctacccatcccgcacaccataacatccgcaggcctaagtgtcgatcttctatctagt 9841165  T
Q  246 cggtcggtcagaaagttcata 266  Q
     |||  ||||| |||||||||    
T  9841164 aggtaagtcaggaagttcata 9841144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 15291963 - 15291867
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    |||||||||||| || |||||||||||||  |||||||||||||||||||  |||||| ||||||||  ||| | || ||||| |||||| ||||||    
T  15291963 agtggtgaaacctcattcaagtctacacaaacatgttttcctcctacccagccgtacaccataacattcgcaggcctgagtgttgatcttctatcta 15291867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 14423789 - 14423893
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||  |||||||| | | ||||||||  | ||||||||||| ||||||  ||  |||||||||||||||||||||||| |||| |||| ||||||    
T  14423789 ttgacgcattttttagggttgcctgtcctacggttaaaggtccgacacctaatcccacaagtggtgaaaccccaatcaagtcttcacaagcatattttcc 14423888  T
Q  188 tccta 192  Q
     ||||    
T  14423889 accta 14423893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 6534469 - 6534383
Alignment:
Q  178 catgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    ||||||||||||||||||||   ||||| ||||||| || |||| ||| |||||||||| |||||||| |||   ||||||||||||    
T  6534469 catgttttcctcctacccataaatacataataacatatgtatgtttaaatgtcgatcttctatctaatgggttattcagaaagttca 6534383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 27355653 - 27355568
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcga 232  Q
    ||||||||||||||| |||| || |||||| ||||||||||||||||| |   ||||| |||||| || |  ||||||||||||||    
T  27355653 agtggtgaaaccccattcaattcaacacatccatgttttcctcctaccgacatgtacaccataacgtccgtttgtctaagtgtcga 27355568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 7716362 - 7716442
Alignment:
Q  163 tcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||||||||||| |||||||||||||||||| | ||  |||||  ||||||||||   |||||| ||||||||||| |||||    
T  7716362 tcaagtctacaaatgcatgttttcctcctatcaatatgtacacgataacatctgttggtctaaatgtcgatctttcatcta 7716442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 264
Target Start/End: Complemental strand, 35739959 - 35739807
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    ||||||||| ||||||| ||||||  ||||  || |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  35739959 tgtcctaccgtaaaaggcccgacct-taatcccactagtggtgaaaccccagtcaagtccacacatgcatgttttcctcctacccattcatacaccataa 35739861  T
Q  211 catctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    |||||||||| |||||||| |||||| || | ||| |||| |||||||||||||    
T  35739860 catctgcatgcctaagtgttgatcttctaccaaatgggtcagtcagaaagttca 35739807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 39434837 - 39434969
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||||| ||||||  |||||||||||||||||||| |||||| |||||| |||||||||  ||   ||||||||||||||| |||||| |     
T  39434837 agtggtgaaaccccagtcaagtacacacatgcatgttttcctccaacccatccgtacaccataacatcgacagacctaagtgtcgatcttctatctagtg 39434936  T
Q  247 ggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||| ||||||||||||| || |||||| ||||    
T  39434937 ggtcagtcagaaagttcacaggcgcctccttct 39434969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 274
Target Start/End: Original strand, 24125139 - 24125325
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    |||| |||| |||||||||| ||||||| ||| |||||||  |||| | ||||  ||  ||||||||||||||| ||||||||||||||||||||||||     
T  24125139 ttgatgcagcttttagggctgcttgtcccaccgtaaaaggcacgacgcataatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttct 24125238  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctc 274  Q
    |||||||| |  ||| | |||||||| |||| | || ||||| |||||| |||||| | |||| ||||| ||||| | |||||||||    
T  24125239 tcctacccgtcagtagaccataacatatgcaggcctgagtgttgatcttctatctagtgggtcagtcaggaagttgacagacgcctc 24125325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 25021768 - 25021655
Alignment:
Q  130 cgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgt 229  Q
    |||||||||||  ||  ||||||||||| ||  ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||     
T  25021768 cgacccctaatcccacaagtggtgaaactccggtcaagtccacacatgcatgttttcctcctacccatccgtacaccataacatctgcaggcctaagtga 25021669  T
Q  230 cgatcttttatcta 243  Q
    ||||||| ||||||    
T  25021668 cgatcttctatcta 25021655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 500362 - 500493
Alignment:
Q  112 gtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataac 211  Q
    |||||||| ||||||| ||||| ||||||  ||  |||||||||||| || |||||||||||||||||||||||||| |||||||| | |||| ||||||    
T  500362 gtcctaccgtaaaaggcccgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatgttttccttctacccatccatacaacataac 500461  T
Q  212 atctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||| ||| | || ||||| |||||| ||||||    
T  500462 atccgcaggcctgagtgttgatcttctatcta 500493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 10189677 - 10189784
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    ||||||||||||||||     ||||||||| |||  || ||||||| |||||||||||| |||||| ||||||||||||||||| || |||| | |||||    
T  10189677 tgtcctaccataaaagccttaacccctaatctcacaagcggtgaaatcccaatcaagtccacacatacatgttttcctcctaccaatccgtaaaacataa 10189776  T
Q  211 catctgca 218  Q
    ||| ||||    
T  10189777 catttgca 10189784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 40839727 - 40839770
Alignment:
Q  153 gaaaccccaatcaagtctacacatgcatgttttcctcctaccca 196  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  40839727 gaaactccaatcaagtctacacatgcatgttttcctcctaccca 40839770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 3188139 - 3188206
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatc 214  Q
    |||||||||||||||  |||| | |||||||||||||||||||| | |||| |||||| |||||||||    
T  3188139 agtggtgaaaccccacacaaggccacacatgcatgttttcctccaatccatccgtacaccataacatc 3188206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 11611185 - 11611115
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgca 218  Q
    ||||||||||||||  | ||||| ||||||||||||||||| ||||||||||| |||| |||||||| ||||    
T  11611185 agtggtgaaacccctgtgaagtccacacatgcatgttttcc-cctacccattcatacaccataacatttgca 11611115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 42922124 - 42921975
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    |||||||||  ||||| |||| | |||| ||||||||||| || ||||  |||| |||    || |||||| ||| ||||||| |||||||  |||||||    
T  42922124 tttgacgcaacttttatggctgcatgtcttaccataaaagctctgaccattaatctcacgtttgatgaaactccagtcaagtccacacatgtttgttttc 42922025  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatctt 236  Q
    |||||||||||  ||||| |||||||||| |||   |||||||| |||||    
T  42922024 ctcctacccatctgtacaccataacatctacatacgtaagtgtcaatctt 42921975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 37517264 - 37517360
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||||| ||||||||| |||||||||||||  ||| |||||| ||||||||| |||||| ||| |||| |||| |  | ||||| |||||| ||||||    
T  37517264 agtggcgaaaccccagtcaagtctacacaaacatattttccacctacccatccgtacaccatcacatttgcaggcatgagtgttgatcttctatcta 37517360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 38815478 - 38815517
Alignment:
Q  171 acacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  38815478 acacatgcatgttttcctcctacccatccgtacaccataa 38815517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 34304607 - 34304783
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||||||  ||||| ||| ||||||  ||||| |||||   ||  ||||||||||||||||||||||| |||||||||||||||||    
T  34304607 ttgacgcagcttttagggctagctgtccaaccgtaaaagccccgactcctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcc 34304706  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    |||  ||||| |||||| ||||||||| ||| | ||||||||||||||| |||||| | |||| |||||||||||||    
T  34304707 tccagcccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttca 34304783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 279
Target Start/End: Original strand, 12401441 - 12401633
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    |||||||||  |||||| ||| ||||||||||||||||||  | || || ||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  12401441 tttgacgcaacttttagtgctgcttgtcctaccataaaagccctgaaccataatcccataagtggtgaaaccccaatcaagtctacacatgcatgttttc 12401540  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    ||||||||||| |||||| |||||||| ||||    ||||| | |||||  |||||| | |||| ||||| ||||||| || |||||| ||||    
T  12401541 ctcctacccatccgtacaccataacatttgcagacttaagtcttgatctgctatctagtaggtcagtcaggaagttcacaggcgcctccttct 12401633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 357713 - 357537
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    |||||| || |||||||||| | ||||||||| ||||||  |||||||||||   ||  ||||||||||| ||| ||||||| ||||||||||||||| |    
T  357713 ttgacgaagcttttagggctgcctgtcctaccgtaaaagcaccgacccctaaacccacaagtggtgaaactccagtcaagtccacacatgcatgttttgc 357614  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    ||| |||||| | |||| ||||||||||||||  ||||||||||||||| |||||| |  ||| |||| ||||||||    
T  357613 tccaacccatccatacaccataacatctgcatacctaagtgtcgatcttctatctagtgtgtcagtcaaaaagttca 357537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 4206582 - 4206437
Alignment:
Q  98 ttttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccat 197  Q
    ||||| |||| | ||||||||| ||||||||| ||  ||||||  ||  ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  4206582 ttttaaggctgcatgtcctaccgtaaaaggtctgatgcctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccaacccat 4206483  T
Q  198 tcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    | ||||| ||||||||| ||| |  | ||||| |||||||||||||    
T  4206482 ttgtacaccataacatccgcaggcttgagtgttgatcttttatcta 4206437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 264
Target Start/End: Original strand, 32115799 - 32115976
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    |||||||||  ||||| |||| | ||||||| | ||||| | ||||| ||||||  ||| |||| |||||||||  ||||||||||||||||||||||||    
T  32115799 tttgacgcaacttttaaggctgcatgtcctaacgtaaaatgcccgacacctaatcccataagtgatgaaaccccggtcaagtctacacatgcatgttttc 32115898  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    ||||||| |||  ||||| ||||||||| ||| | || ||||| |||||| |||||| | |||| ||||| |||||||    
T  32115899 ctcctactcatctgtacaccataacatccgcaggcctgagtgttgatcttctatctagtaggtcagtcaggaagttca 32115976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 959713 - 959832
Alignment:
Q  110 ttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcata 209  Q
    |||||||||| ||||||| ||||| ||||||  ||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| ||||||   ||    
T  959713 ttgtcctaccgtaaaaggcccgacacctaatcccataagtggtgaaacttcaatcaagtccacacatgcatgttttcctcctacccatccgtacactgta 959812  T
Q  210 acatctgcatgtctaagtgt 229  Q
    ||||| ||||| || |||||    
T  959813 acatccgcatgcctgagtgt 959832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 33220684 - 33220551
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    ||||||||| ||||||  |||||||||||   ||  ||||||||||||||| |||| |  |||||||||||||||||||| || ||| ||||||||||||    
T  33220684 tgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaaattcacacatgcatgttttcctccaactcatccgtacatcataa 33220585  T
Q  211 catctgcatgtctaagtgtcgatcttttatctaa 244  Q
    |||||||| | || |||||| ||||| |||||||    
T  33220584 catctgcaggcctgagtgtcaatcttctatctaa 33220551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 45590 - 45474
Alignment:
Q  163 tcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagtt 262  Q
    ||||||||||||| |||||||||||  |||||||| |||||| ||| ||||||||| | || ||||| |||||| |||||| | |||| |||||||||||    
T  45590 tcaagtctacacaagcatgttttccatctacccatccgtacaccatcacatctgcaggcctgagtgttgatcttctatctagtgggtcagtcagaaagtt 45491  T
Q  263 catagacgcctcattct 279  Q
    || ||||||||| ||||    
T  45490 caaagacgcctccttct 45474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 29338020 - 29337924
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    |||||| ||||| | |||||||| |||||||||||||||||||||||||||  | ||| ||||||||||||| | ||||||||||| ||| ||||||    
T  29338020 agtggtaaaacctcgatcaagtccacacatgcatgttttcctcctacccatctgcacaccataacatctgcaggcctaagtgtcgaacttctatcta 29337924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 28543545 - 28543627
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgt 229  Q
    |||||||||||| || |||| || |||||||||||||||||||||| ||||  ||||||||||||||||||||| || |||||    
T  28543545 agtggtgaaacctcagtcaaatccacacatgcatgttttcctcctatccatctgtacatcataacatctgcatgcctgagtgt 28543627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 20693537 - 20693421
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    |||||||||||||  |||||||  ||| | |||||||||||||||||||||  ||||| ||||| ||||||| | |||||||| ||||||||||||| |     
T  20693537 agtggtgaaaccctgatcaagttcacata-gcatgttttcctcctacccatctgtacaccataatatctgcaggcctaagtgtggatcttttatctagtt 20693439  T
Q  247 ggtcggtcagaaagttca 264  Q
    ||||  ||| ||||||||    
T  20693438 ggtcaatcaaaaagttca 20693421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 34415607 - 34415656
Alignment:
Q  148 gtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccat 197  Q
    |||||||||||||||||||||  ||| ||| |||||||||||||||||||    
T  34415607 gtggtgaaaccccaatcaagttcacaaatgtatgttttcctcctacccat 34415656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 17249240 - 17249199
Alignment:
Q  149 tggtgaaaccccaatcaagtctacacatgcatgttttcctcc 190  Q
    ||||||||||||| ||||||| |||||||||| |||||||||    
T  17249240 tggtgaaaccccagtcaagtccacacatgcatattttcctcc 17249199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 87 - 264
Target Start/End: Original strand, 34644676 - 34644853
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    |||||||||  |||||||| | ||||||||||| ||||||  |||||||||||   ||  ||||||||||||||| ||||||| ||||||||||||||||    
T  34644676 tttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttc 34644775  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    ||||  ||||| | |||| ||||||||| ||||  ||||||||||||||| |||||| | |||| |||||||||||||    
T  34644776 ctccagcccatccatacaccataacatccgcatacctaagtgtcgatcttctatctagtgggtcagtcagaaagttca 34644853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 87 - 279
Target Start/End: Complemental strand, 28041124 - 28040932
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    |||||||| |||||||| ||| | | ||||||  ||||||||||||| ||||||  ||  ||| ||||||||||| ||||||||||||| ||||||||||    
T  28041124 tttgacgcggattttagagctgcctatcctacggtaaaaggtccgacacctaatcccacaagtagtgaaaccccagtcaagtctacacaagcatgttttc 28041025  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    | |||||||||  ||||| ||||||||||||| | || ||||| |||||| |||||| | |||  ||||| ||||||| ||||||||| ||||    
T  28041024 cacctacccatctgtacaccataacatctgcaggcctgagtgttgatcttctatctagtgggttagtcaggaagttcacagacgcctccttct 28040932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 37932155 - 37932038
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    |||||||||||| |||||||||| || ||||||||||||||||||  ||||  ||||||||||||||| ||| | |||||||||||| || ||||||||     
T  37932155 agtggtgaaacctcaatcaagtccacgcatgcatgttttcctcctgtccatatgtacatcataacatccgcaggcctaagtgtcgattttctatctaatg 37932056  T
Q  247 ggtcggtcagaaagttca 264  Q
    ||||||||||||||||||    
T  37932055 ggtcggtcagaaagttca 37932038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 19035558 - 19035734
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||||| | || |||||  ||||||||||||| ||||||  ||  | |||||||| |||| ||||||||||||| |||||| ||||    
T  19035558 ttgacgcagcttttagggctgcctgccctacggtaaaaggtccgacacctaatcccacaactggtgaaatcccagtcaagtctacacaagcatgtgttcc 19035657  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
     ||||||||| |||||| || ||| ||  |||  || ||||| ||||||||||||| | |||||||||| |||||||    
T  19035658 acctacccatccgtacaccaaaacgtccacatacctgagtgttgatcttttatctagtgggtcggtcaggaagttca 19035734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 29169731 - 29169599
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||| ||| | || ||||| |||||| | ||||       
T  29169731 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatccgcaggcctgagtgttgatcttctttctagcg 29169632  T
Q  247 ggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||| ||||| ||||||| || |||||| ||||    
T  29169631 ggtcagtcaggaagttcacaggcgcctccttct 29169599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 45659644 - 45659495
Alignment:
Q  88 ttgacgcagatttta-gggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    ||||||||| ||||| ||||| | ||||||||  ||||||| ||||  ||||||  ||  ||||||||||||||| |||||||||| |||||||||||||    
T  45659644 ttgacgcagcttttaagggctgcatgtcctacggtaaaaggcccgatacctaatcccacaagtggtgaaaccccagtcaagtctacgcatgcatgttttc 45659545  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatctt 236  Q
    |||||||||||  |||||  ||||||| |||||| || ||||| ||||||    
T  45659544 ctcctacccatctgtacactataacatgtgcatgcctgagtgttgatctt 45659495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 4861926 - 4861794
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||| ||| |||| || ||||||||||||||| ||||||||||| |||||| ||||||||||| | |   ||||||||||||| ||| ||||     
T  4861926 agtggtgaaacaccagtcaaatccacacatgcatgtttttctcctacccatccgtacaccataacatctgtaggctgaagtgtcgatcttctatttaata 4861827  T
Q  247 ggtcggtcagaaagttcatagacgcctcattct 279  Q
    | ||  |||  ||||||| | ||||||||||||    
T  4861826 gatcaatcaagaagttcacaaacgcctcattct 4861794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 38731714 - 38731870
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    |||| |||||||||||  ||||||||||| |  |  ||||||||||||| | |||| || |||  ||||| |||||||||||||||| || ||| |||||    
T  38731714 tgtcataccataaaagacccgacccctaaatcaacgagtggtgaaaccctagtcaaatccacatttgcatattttcctcctacccatccgcacaccataa 38731813  T
Q  211 catctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatag 267  Q
     ||||||| || ||| | |||||||| |||||| | |||| || || ||||||||||    
T  38731814 tatctgcaagtttaactatcgatcttctatctagtgggtcagtaaggaagttcatag 38731870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 42919992 - 42920122
Alignment:
Q  110 ttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcata 209  Q
    |||||||| |||||||| |||||||| ||||  ||  ||| |||||| | |||||||| | |||||   |||||||||||||||||||  ||||| | ||    
T  42919992 ttgtcctatcataaaagctccgacccgtaatcccacgagtagtgaaatctcaatcaagcccacacaaatatgttttcctcctacccatctgtacacctta 42920091  T
Q  210 acatctgcatgtctaagtgtcgatcttttat 240  Q
    ||||||||| | |||| ||| ||||||||||    
T  42920092 acatctgcaagcctaaatgttgatcttttat 42920122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 245
Target Start/End: Complemental strand, 25375806 - 25375672
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    ||||||||| |||||| || ||||||||||   |  ||| |||||||||   |||| || || | ||||||||||||| |||||||| |||| | |||||    
T  25375806 tgtcctaccgtaaaagctctgacccctaatccgacgagtagtgaaaccctggtcaaatccacgcttgcatgttttccttctacccatccgtataccataa 25375707  T
Q  211 catctgcatgtctaagtgtcgatcttttatctaat 245  Q
    ||||||||   ||||||||| ||||| ||||||||    
T  25375706 catctgcagacctaagtgtcaatcttctatctaat 25375672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 37200152 - 37200270
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    |||||||||||  || ||||||| ||||||||||||||||||| |||||||| ||||  |||||||| | ||    |||||||| ||||| |||||| |     
T  37200152 agtggtgaaacatcagtcaagtc-acacatgcatgttttcctcttacccattggtaccccataacat-ttcaaacttaagtgtcaatcttctatctagtg 37200249  T
Q  247 ggtcggtcagaaagttcatag 267  Q
    |||| | ||||||||||||||    
T  37200250 ggtcagacagaaagttcatag 37200270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 22375538 - 22375479
Alignment:
Q  183 tttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatct 242  Q
    |||||||||||| ||||||||| ||||||||  ||| | ||||||||||||||| |||||    
T  22375538 tttcctcctaccaattcgtacaccataacattcgcaggcctaagtgtcgatcttctatct 22375479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 35387248 - 35387181
Alignment:
Q  153 gaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatg 220  Q
    |||||||  |||||||  |||||||||||||| |||| ||| |||  |||||||||||||||||||||    
T  35387248 gaaacccagatcaagttcacacatgcatgtttacctcttacacatctgtacatcataacatctgcatg 35387181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 22347063 - 22347103
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  22347063 agtggtgaaacaccaatcaagtctacagaagcatgttttcc 22347103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 50000862 - 50000730
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||| ||||||||| ||| | ||||||||||||||| |||||| |     
T  50000862 agtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttctatctagtg 50000763  T
Q  247 ggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||| ||||||||||||| || |||||| ||||    
T  50000762 ggtcagtcagaaagttcacaggcgcctccttct 50000730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 274
Target Start/End: Original strand, 31847198 - 31847384
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||||| | ||||||||  ||||||  || ||||||||   ||  ||||||||||||| | ||||||| |||||||||||||||||    
T  31847198 ttgacgcagcttttagggctgcctgtcctactgtaaaagcccccacccctaaacccacaagtggtgaaaccctagtcaagtccacacatgcatgttttcc 31847297  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctc 274  Q
    ||| | ||||  ||||| ||||| ||||||| | ||||||||| |||||||||||| | |||| ||||||||||||| || ||||||    
T  31847298 tccaatccatctgtacaccataatatctgcaggcctaagtgtcaatcttttatctagtgggtcagtcagaaagttcacaggcgcctc 31847384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 3330120 - 3330237
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||| | |||| |||||| ||||||||||||||| |||||||| |||||| |||||| |     
T  3330120 agtggtgaaaccccagtcaagtccacacatgcacgttttcctccaatccatccgtacaccataacatctgcatgcctaagtgttgatcttctatctagtg 3330219  T
Q  247 ggtcggtcagaaagttca 264  Q
    |||| |||||||||||||    
T  3330220 ggtcagtcagaaagttca 3330237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 53170628 - 53170803
Alignment:
Q  98 ttttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccat 197  Q
    |||||||||| | |||| |||  ||||||||||||| ||||||  ||  ||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  53170628 ttttagggctgcctgtcatactgtaaaaggtccgacacctaatcccacgagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccat 53170727  T
Q  198 tcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
          | |||||| |||||||| |||||||| |||||| |||||| | |||| ||||| ||||||| ||||||||| ||||    
T  53170728 ------accataacgtctgcatgcctaagtgttgatcttctatctagtaggtcagtcaggaagttcacagacgcctctttct 53170803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 132496 - 132653
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctac--cataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgtttt 185  Q
    ||||||||| |||||||||| | ||||||||  | ||||||  ||||||||||||   |  ||||||||||||||| ||||||  |||||||||| ||||    
T  132496 ttgacgcagcttttagggctgcctgtcctacaccgtaaaagtcccgacccctaatccaacaagtggtgaaaccccagtcaagttcacacatgcatatttt 132595  T
Q  186 cctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||||||||  ||  ||||| ||||||||||||||| | ||||||||||||| ||||||    
T  132596 cctcctacgtatctgtacaccataacatctgcatgccgaagtgtcgatcttctatcta 132653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 6865726 - 6865633
Alignment:
Q  171 acacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||  ||||||||| ||||| |||||||| | || || ||||||||||    
T  6865726 acacatgcatgttttcctcctacccatacgtacatcataacatccgcatacctaagtgtcaatcttctatctaatagatcagttagaaagttca 6865633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 279
Target Start/End: Original strand, 26521598 - 26521790
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    |||||||||  |||||||| |  |||||||||||||||||||| ||||||||||  ||  |||| |||||| ||| ||||||| | ||||||||||||||    
T  26521598 tttgacgcaacttttagggttgtttgtcctaccataaaaggtctgacccctaatcccacaagtgatgaaactccagtcaagtccatacatgcatgttttc 26521697  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    ||||||||| |  ||||| |||||| |  | | |  ||| |||||||||| |||||| | |||| ||||||||| ||| |  |||||||||||    
T  26521698 ctcctacccgtctgtacaccataaccttcgtaggcttaaatgtcgatcttctatctagtgggtcagtcagaaagctcacatgcgcctcattct 26521790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 16957722 - 16957833
Alignment:
Q  163 tcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagtt 262  Q
    ||||||| ||||||||||||||| | ||||||||| |||||| ||||||||||||| | |||||||| |||||||||||||   |||| ||||| |||||    
T  16957722 tcaagtccacacatgcatgttttacacctacccatccgtacaccataacatctgcaggcctaagtgttgatcttttatctagcgggtcagtcaggaagtt 16957821  T
Q  263 catagacgcctc 274  Q
    || || ||||||    
T  16957822 cacaggcgcctc 16957833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 25504463 - 25504545
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgt 229  Q
    |||||||||||| || ||||||||| ||||||||||||| ||||||||||| |||||| ||||||||| |||||||| |||||    
T  25504463 agtggtgaaacctcagtcaagtctatacatgcatgtttttctcctacccatccgtacaccataacatccgcatgtctgagtgt 25504545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 25706683 - 25706796
Alignment:
Q  151 gtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtc 250  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||  ||||| ||||||||  | | |  |||||||||||||| |||||| | ||||    
T  25706683 gtgaaacccaaatcaagtccacacatgcatgtttttctcctacccatctgtacaccataacatacgtaggcttaagtgtcgatcttctatctagtgggtc 25706782  T
Q  251 ggtcagaaagttca 264  Q
     |||||||||||||    
T  25706783 agtcagaaagttca 25706796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 12053583 - 12053677
Alignment:
Q  149 tggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||  ||||| |||||||||||||   | |||| |||||||| ||||||    
T  12053583 tggtgaaaccccaataatgtccacacatgcatgttttcctcctacccatctgtacaacataacatctgcagaccaaagtctcgatcttctatcta 12053677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 53619756 - 53619838
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgt 229  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| || ||| |||||| |||||||| |||| | ||||||||    
T  53619756 agtggtgaaaccccagtcaagtccacacatgcatgttttcctccaactcatccgtacaccataacatatgcaggcctaagtgt 53619838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 56462042 - 56461948
Alignment:
Q  149 tggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    |||||||||| || ||||||| ||||||||||||||||| ||||| ||| |||||| ||||||||  |||||  |||||||||||||| ||||||    
T  56462042 tggtgaaacctcagtcaagtccacacatgcatgttttccacctactcatccgtacaccataacattcgcatgcttaagtgtcgatcttctatcta 56461948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 30940676 - 30940559
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||| |||||| || ||||||||||||| ||||||||||| |||||||||||||||| ||||||||  | | | || ||||| |||||| |||||| |     
T  30940676 agtggcgaaacctcagtcaagtctacacaagcatgttttccacctacccattcgtacaccataacattcgtaggccttagtgttgatcttctatctagtg 30940577  T
Q  247 ggtcggtcagaaagttca 264  Q
    |||| ||||| |||||||    
T  30940576 ggtcagtcaggaagttca 30940559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 12918285 - 12918192
Alignment:
Q  171 acacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    ||||||||||||||||||| ||||||| | |||| ||| |||||  || | ||||||||||||||| |||||| | |||| || ||||||||||    
T  12918285 acacatgcatgttttcctcttacccatccatacaccatgacatccacaggcctaagtgtcgatcttctatctagtgggtcagttagaaagttca 12918192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 18534586 - 18534659
Alignment:
Q  163 tcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatctt 236  Q
    ||||||| |||||||||||||||||| |||||||| |||| | |||||||| || | | |||||||||||||||    
T  18534586 tcaagtccacacatgcatgttttccttctacccatccgtataccataacatttgtaggcctaagtgtcgatctt 18534659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 53098541 - 53098644
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaacccca-atcaagtctacacatgcatgttttcctcctacccattcgtacatcata 209  Q
    ||||||||| |||||  |||||||||||||  ||| ||| ||||||||||  |||||||| |||  |||||||||||||||||||||| |||||| ||||    
T  53098541 tgtcctaccgtaaaaa-tccgacccctaatc-catgagtagtgaaacccccgatcaagtccacatttgcatgttttcctcctacccatccgtacaccata 53098638  T
Q  210 acatct 215  Q
    ||||||    
T  53098639 acatct 53098644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 54927626 - 54927675
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctaccca 196  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  54927626 agtggggaaaccccaatcaagtccacacatgcatgtttccctcctaccca 54927675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 9815798 - 9815709
Alignment:
Q  146 tagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatctt 236  Q
    |||||| |||||||| ||||||| ||||||||| ||||||||||||||| ||  ||||| |||| ||||||||  ||||| ||| ||||||    
T  9815798 tagtggcgaaaccccgatcaagt-tacacatgcttgttttcctcctacctatctgtacaccatagcatctgcagatctaaatgttgatctt 9815709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 55933373 - 55933303
Alignment:
Q  173 acatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    |||| ||||||||||||| |||||| |||| | ||||||||||||    ||||||||||||||| ||||||    
T  55933373 acattcatgttttcctccaacccatccgtagaccataacatctgcggacctaagtgtcgatcttctatcta 55933303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 39583225 - 39583034
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||||| | | |||||||||||| || ||||||| ||||  ||  |||||| |||||  | ||||||| || ||||||||||||||    
T  39583225 ttgacgcagcttttagggctgcctatcctaccataaatggcccgacccttaatcccacaagtggtaaaacctaagtcaagtccacgcatgcatgttttcc 39583126  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||||||||| ||||||  |||||||| ||||| ||||||||||||||| |||||| | ||||  |||||||||||| | ||||||| ||||    
T  39583125 tcctacccatccgtacactataacatccgcatgcctaagtgtcgatcttctatctagtgggtcaatcagaaagttcacatacgcctccttct 39583034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 52741497 - 52741316
Alignment:
Q  98 ttttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccat 197  Q
    |||||||||| | |||||||| ||||||||||| ||  |||||  ||  |||||||||||| || ||||||||||||| ||||||||||| |||||||||    
T  52741497 ttttagggctgcctgtcctacaataaaaggtcctacatctaatcccacaagtggtgaaacctcagtcaagtctacacaagcatgttttccacctacccat 52741398  T
Q  198 tcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
     |||| | || |||||||||| |||| ||||| |||||| |||||| | |||| ||||| ||||||| | ||||||| ||||    
T  52741397 ccgtataccacaacatctgcaagtctgagtgttgatcttctatctagtgggtcagtcaggaagttcacatacgcctccttct 52741316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 53785820 - 53785968
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||| | ||| |||||| | | ||||||  ||||||| ||||| ||||||  || |||||||||||||||| |||||||||||||||||||||||||    
T  53785820 ttgacgcggctttaagggctgcctatcctacggtaaaaggcccgacacctaatcccactagtggtgaaaccccagtcaagtctacacatgcatgttttcc 53785919  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatctt 236  Q
    |||||||||| |||||| || |||||| ||||| || ||||| ||||||    
T  53785920 tcctacccatccgtacaccaaaacatccgcatgcctgagtgttgatctt 53785968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 29861948 - 29862063
Alignment:
Q  128 tccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagt 227  Q
    ||||||||||||| | |  |||| | |||||||| ||||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  29861948 tccgacccctaatctaacaagtgtttaaaccccagtcaagttcacacatgcatgttttcctcctacccatccgtacaccataacatctgcatgcctaagt 29862047  T
Q  228 gtcgatcttttatcta 243  Q
    ||||||||| ||||||    
T  29862048 gtcgatcttctatcta 29862063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 49018095 - 49018250
Alignment:
Q  109 cttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcat 208  Q
    ||||||||||| |||||||  |||| ||||||| ||  ||||||||||| ||| |||||| |||||||||||||||||||| |||| || |||||| |||    
T  49018095 cttgtcctaccgtaaaaggctcgacacctaattccacaagtggtgaaactccagtcaagtttacacatgcatgttttcctcgtaccaatccgtacaccat 49018194  T
Q  209 aacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    |||||||||||| || |||||  ||||| |||||| | |||| ||||| |||||||    
T  49018195 aacatctgcatgcctgagtgttaatcttctatctagtgggtcagtcaggaagttca 49018250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 37992485 - 37992619
Alignment:
Q  130 cgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgt 229  Q
    ||||| ||||| |||| |||| ||||||||| |||||||| |||||  |||||||||||||||||||| ||||||||||||||||| ||   ||||||||    
T  37992485 cgacctctaatctcatgagtgatgaaaccccgatcaagtccacacacacatgttttcctcctacccatccgtacatcataacatctacagacctaagtgt 37992584  T
Q  230 cgatcttttatctaatcggtcggtcagaaagttca 264  Q
    | ||||| |||| | | |||| || ||||||||||    
T  37992585 ccatcttctatcaagtgggtcagtgagaaagttca 37992619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 13582620 - 13582729
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||||| ||||||||||  ||||||| | ||| ||||||  ||  |||| ||||||| |  |||||||||||||||||||||||||    
T  13582620 ttgacgcagcttttagggctgcttgtcctacggtaaaaggcctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttttcc 13582719  T
Q  188 tcctacccat 197  Q
    ||||||||||    
T  13582720 tcctacccat 13582729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 7900969 - 7901074
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||| ||   |||||||| ||||||  || |||||||||  ||  ||||||||||||||| ||||||| |||||||||||||||||    
T  7900969 ttgacgcagtttttagggatatccgtcctaccgtaaaagacccaacccctaatcccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcc 7901068  T
Q  188 tcctac 193  Q
    ||||||    
T  7901069 tcctac 7901074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 54508321 - 54508224
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaat 245  Q
    ||||||||||||||||||||||  ||||||||||||||| || |||||||| |||||| ||||||||| ||||| | || |||| | ||| ||||||||    
T  54508321 agtggtgaaaccccaatcaagtacacacatgcatgtttt-cttctacccatccgtacaccataacatccgcatgccgaaatgtcaaccttctatctaat 54508224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 35236317 - 35236413
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttt 184  Q
    ||||||||  |||||| ||||| | |||||||||||||||  ||| |||||||  ||   ||||||||||| |||||||||| ||||||||||||||    
T  35236317 ttgacgcaacttttagagctacctatcctaccataaaaggctcgatccctaatcccacaggtggtgaaacctcaatcaagtccacacatgcatgttt 35236413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 7501948 - 7501877
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgca 218  Q
    |||||||||||||   | |||||||||||||||||||||||| ||||| || |||| | |||||||||||||    
T  7501948 agtggtgaaaccctggttaagtctacacatgcatgttttccttctaccaatccgtataccataacatctgca 7501877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 44198878 - 44199000
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||  |||||| ||| | || |||||  ||||||||||||| ||||||  ||  ||||||||||||||| ||||||||||||   ||||||||||    
T  44198878 ttgacgcaacttttagagctgcctgacctacggtaaaaggtccgacacctaatcccacaagtggtgaaaccccagtcaagtctacactaacatgttttcc 44198977  T
Q  188 tcctacccattcgtacatcataa 210  Q
     ||||| ||| | |||| |||||    
T  44198978 acctactcatccatacaccataa 44199000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 52411839 - 52411722
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    |||||| ||||| || || |||| ||| ||| | |||||||||||  ||||||| ||||||||||||||||| | ||||| ||| ||||| |||||| |     
T  52411839 agtggtaaaacctcagtcgagtccacatatgtaagttttcctcctgtccattcggacatcataacatctgcaggcctaagcgtcaatcttctatctagtg 52411740  T
Q  247 ggtcggtcagaaagttca 264  Q
    |||| || | ||||||||    
T  52411739 ggtcagttaaaaagttca 52411722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 38146177 - 38146269
Alignment:
Q  98 ttttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcc 190  Q
    |||||||||| | ||||||||| | |||| |||||||||||||  ||  ||| |||||||||||  ||||||  ||||||||| |||||||||    
T  38146177 ttttagggctgcatgtcctaccctcaaagctccgacccctaatcccacaagtcgtgaaaccccatgcaagtcctcacatgcatattttcctcc 38146269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 5338817 - 5338884
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatc 214  Q
    ||||||| ||||| ||||||||| ||| ||||||||||| || |||||||||| |||| | |||||||    
T  5338817 agtggtgtaacccaaatcaagtccacagatgcatgtttttcttctacccattcatacaccgtaacatc 5338884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 5825382 - 5825558
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    |||| |||| |||||||||| | |||||| || ||||||   ||||||||||   ||  ||||||||||||||| ||||||| |||||||||||||||||    
T  5825382 ttgatgcagcttttagggcttcctgtcctgccgtaaaagcctcgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcc 5825481  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    ||| ||||||||||||| ||||||||| ||| | ||| ||||||||||| |||||| | ||||  ||||||||||||    
T  5825482 tccaacccattcgtacaccataacatccgcaggcctatgtgtcgatcttctatctagtgggtcaatcagaaagttca 5825558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 28517224 - 28517092
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||| |||||| |||||| |||||||| |||| | ||||||||||||||| |||||| |     
T  28517224 agtggtgaaaccccagtcaagtccacacatacatgttttcctccaacccatccgtacaccataacatttgcaggcctaagtgtcgatcttctatctagtg 28517125  T
Q  247 ggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||| ||||||||||||| || |||||| ||||    
T  28517124 ggtcagtcagaaagttcacaggcgcctccttct 28517092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 45613779 - 45613647
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||| |||||| | ||||       
T  45613779 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatccgcaggcctgagtgttgatcttctttctagcg 45613680  T
Q  247 ggtcggtcagaaagttcatagacgcctcattct 279  Q
    |||| ||||| ||||||| ||||| ||| ||||    
T  45613679 ggtcagtcaggaagttcacagacgtctccttct 45613647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 4501368 - 4501495
Alignment:
Q  87 tttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    |||||||||| |||||||| |  |||||||||  ||||||| ||||| ||||||  ||  ||||||||||||||| ||||||||||||||||||||||||    
T  4501368 tttgacgcagcttttagggttgtttgtcctacggtaaaaggcccgacacctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttc 4501467  T
Q  187 ctcctacccattcgtacatcataacatc 214  Q
    |||||||| || |||||| |||||||||    
T  4501468 ctcctacctatccgtacaccataacatc 4501495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 279
Target Start/End: Original strand, 983060 - 983251
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| ||||| |||| | |||||||| ||||||||||| || ||||||  ||  |||||| |||||| | ||||||||||||| ||||||||| |    
T  983060 ttgacgcagcttttatggctgcctgtcctacaataaaaggtcccacacctaatcccacaagtggttaaaccctagtcaagtctacacaagcatgtttttc 983159  T
Q  188 tcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttcatagacgcctcattct 279  Q
     ||||| ||||||||||||||||| || | ||| || ||||| |||||| |||||| | |||| || || |||||||  |||||||| ||||    
T  983160 acctactcattcgtacatcataacttccggatgcctgagtgttgatcttctatctagtgggtcagttaggaagttcaccgacgcctccttct 983251  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 3676750 - 3676927
Alignment:
Q  88 ttgacgcagattttagggcta-cttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    ||||||||| ||||||||||  | ||||||||  ||||||| ||||| ||||||  ||  ||||||||||||||| ||||||||||||| ||||||||||    
T  3676750 ttgacgcagcttttagggctggcctgtcctacggtaaaaggaccgacacctaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttttc 3676849  T
Q  187 ctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcagaaagttca 264  Q
    | ||||||||| | |||| |||||||||| || | || ||||| ||| || |||||| | |||| ||||| |||||||    
T  3676850 cacctacccatccctacaccataacatctacaagcctgagtgttgattttctatctattgggtcagtcaggaagttca 3676927  T

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Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 43857008 - 43857140
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataa 210  Q
    ||||||||  ||||||  ||||||||||||  ||  ||||||||||||||  ||||||| || |||| ||||||| ||||||||||| |||||| |||||    
T  43857008 tgtcctactgtaaaagccccgacccctaatcccacaagtggtgaaacccccgtcaagtccacgcatgtatgtttttctcctacccatccgtacaccataa 43857107  T
Q  211 catctgcatgtctaagtgtcgatcttttatcta 243  Q
    |||||||| | |||||||| |||||| ||||||    
T  43857108 catctgcaggcctaagtgttgatcttctatcta 43857140  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 21326834 - 21326709
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||| | ||||||||||  |||||||||  ||||||||||||| ||||||  ||  ||||||||||| |||||||| |||||||| | |||||||||    
T  21326834 ttgacgcggcttttagggctgtttgtcctacggtaaaaggtccgacacctaatcccacaagtggtgaaactccaatcaaatctacacaagtatgttttcc 21326735  T
Q  188 tcctacccattcgtacatcataacat 213  Q
     |||||||||  ||||| ||||||||    
T  21326734 acctacccatctgtacaccataacat 21326709  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 19277463 - 19277559
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||| | ||||||||| ||| | || ||||| |||||| ||||||    
T  19277463 agtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccgtagaccataacatccgcaggcctgagtgttgatcttctatcta 19277559  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 22198097 - 22198194
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgtttt 185  Q
    ||||||| | |||||||||| |  |||||||||||||||| ||||| ||||||  ||  ||||| |||||||||||||| ||||||||||||||||||    
T  22198097 ttgacgccgcttttagggctgcgcgtcctaccataaaaggcccgacacctaatcgcacaagtggcgaaaccccaatcaaatctacacatgcatgtttt 22198194  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 22239724 - 22239627
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgtttt 185  Q
    ||||||| | |||||||||| |  |||||||||||||||| ||||| ||||||  ||  ||||| |||||||||||||| ||||||||||||||||||    
T  22239724 ttgacgccgcttttagggctgcgcgtcctaccataaaaggcccgacacctaatcgcacaagtggcgaaaccccaatcaaatctacacatgcatgtttt 22239627  T

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Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 47679295 - 47679412
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatc 246  Q
    ||||||||||||| | ||||||||| ||||| |||||||||||||||||||||| ||  ||| ||||  | | ||| ||||||||||||| |||||| |     
T  47679295 agtggtgaaaccctagtcaagtctagacatgtatgttttcctcctacccattcgcacgccattacattcgtaagtcaaagtgtcgatcttctatctagtg 47679394  T
Q  247 ggtcggtcagaaagttca 264  Q
     ||| |||||||||||||    
T  47679395 cgtcagtcagaaagttca 47679412  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 10905282 - 10905369
Alignment:
Q  154 aaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||||| || ||||||  |||||||||||||||||||||| |||| |||||| |  |||||||||| | ||||||||||||||| ||||||    
T  10905282 aaacctcagtcaagttcacacatgcatgttttcctcctatccatccgtacacc--aacatctgcaggcctaagtgtcgatcttatatcta 10905369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 38596635 - 38596740
Alignment:
Q  157 ccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaatcggtcggtcag 256  Q
    ||||| ||||||| | |||||||| |||| || |||| ||| |||||| |||||||||  ||||  |||||||||||||||||| || | ||||||||||    
T  38596635 ccccagtcaagtccatacatgcatatttttcttctacacatccgtacaccataacatccacatgcttaagtgtcgatcttttatttagtgggtcggtcag 38596734  T
Q  257 aaagtt 262  Q
     |||||    
T  38596735 gaagtt 38596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 38839513 - 38839594
Alignment:
Q  163 tcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatctaat 245  Q
    ||||||| ||||||||||||||| ||| ||| ||| |||||| ||||||||||  ||||||||  ||||||||| ||||||||    
T  38839513 tcaagtccacacatgcatgtttt-ctcttacacatccgtacaccataacatctatatgtctaaccgtcgatcttctatctaat 38839594  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 32584722 - 32584813
Alignment:
Q  98 ttttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctc 189  Q
    |||||||| | | ||||||||| |||||   ||||||||||||  ||  || |||||||||| | ||||||| |||||||||||||||||||    
T  32584722 ttttagggttgcatgtcctaccgtaaaatccccgacccctaatcccacaagaggtgaaacccgagtcaagtccacacatgcatgttttcctc 32584813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 24527710 - 24527826
Alignment:
Q  98 ttttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctccta-ccca 196  Q
    |||||||||| | ||||||||  ||||||||||||| ||||||  ||  | || ||| |||| | |||||||||||||  |||||||||| |||| ||||    
T  24527710 ttttagggctgcctgtcctacggtaaaaggtccgacacctaatcccacaaatgatgagaccctagtcaagtctacacaaacatgttttccacctatccca 24527809  T
Q  197 ttcgtacatcataacat 213  Q
    | |||||| ||| ||||    
T  24527810 tccgtacaccatgacat 24527826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 27521605 - 27521694
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgta 202  Q
    ||||||||| ||||||| ||||| ||||||  ||  | |||||||| | || ||||||||||||||  ||||||| ||||||||||| ||||    
T  27521605 tgtcctaccgtaaaaggcccgacacctaatcccacaaatggtgaaatctcagtcaagtctacacat--atgtttttctcctacccatccgta 27521694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 180 - 54
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcc 187  Q
    ||||||||| |||||||||| | ||||||||  ||||||| ||||| | ||||  ||  ||||||||||||||| ||||||||| |||||||||||||||    
T  180 ttgacgcagtttttagggctgcctgtcctacagtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaagtctatacatgcatgttttcc 81  T
Q  188 tcctacccattcgtacatcataacatc 214  Q
    |||||||||| ||||||||||||||||    
T  80 tcctacccatccgtacatcataacatc 54  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 33383 - 33517
Alignment:
Q  111 tgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgc--atgttttcctcctacccattcgtacatcat 208  Q
    ||||||||| ||||||| ||||| ||||||  ||| |||||||||||||||||||||| | |||||||  ||||||||||||||||||| |||||| |||    
T  33383 tgtcctaccgtaaaaggcccgacacctaatcccataagtggtgaaaccccaatcaagtttgcacatgcatatgttttcctcctacccatccgtacaccat 33482  T
Q  209 aacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    |||||| ||||| || ||||| |||||| ||||||    
T  33483 aacatccgcatgcctgagtgttgatcttctatcta 33517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 47476 - 47387
Alignment:
Q  147 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatctt 236  Q
    ||||||||||||||||||||||| |||| ||||| |||| ||| ||| |||| ||||| |||||||| |||||  |||||||| ||||||    
T  47476 agtggtgaaaccccaatcaagtccacacttgcatttttttctcatactcatttgtacaccataacatttgcatccctaagtgttgatctt 47387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 19916 - 19987
Alignment:
Q  172 cacatgcatgttttcctcctacccattcgtacatcataacatctgcatgtctaagtgtcgatcttttatcta 243  Q
    ||||||||||||||||||||||| || |||||| |||||||||| || ||||||||||  ||||| ||||||    
T  19916 cacatgcatgttttcctcctacctatccgtacaccataacatctacaggtctaagtgttcatcttctatcta 19987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 6445 - 6542
Alignment:
Q  88 ttgacgcagattttagggctacttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttc 186  Q
    ||||||||  ||||||||||   ||||||||  ||||||||||||||| ||||  ||  ||||||||||||||| ||||||||||||| ||||||||||    
T  6445 ttgacgcaacttttagggctgtctgtcctacggtaaaaggtccgaccc-taatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttttc 6542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 18339 - 18209
Alignment:
Q  110 ttgtcctaccataaaaggtccgacccctaatttcattagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccattcgtacatcata 209  Q
    |||||||| |||||||| |||||||| ||||  ||  ||| |||||| | |||||||| | |||||   |||||||||||||||||||  ||||| | ||    
T  18339 ttgtcctatcataaaagctccgacccgtaatcccacgagtagtgaaatctcaatcaagcccacacaaatatgttttcctcctacccatctgtacacctta 18240  T
Q  210 acatctgcatgtctaagtgtcgatcttttat 240  Q
    ||||||||| | |||| ||| ||||||||||    
T  18239 acatctgcaagcctaaatgttgatcttttat 18209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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