View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_31 (Length: 294)
Name: NF10498_low_31
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 2223448 - 2223710
Alignment:
| Q |
12 |
catagggtgatggttaattaatggtgactcatgagatataaagaaacttacaattaagcaaactaaacatgtacacttaattctcataaagaaaatatgt |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2223448 |
cataaggtgatggttaattaatggtgactcatgagatataaagaaacttacaattaagcaa-ctaaacatgtacacttaattctcataaagaaaatatgt |
2223546 |
T |
|
| Q |
112 |
acaccgaattggttaattagtttagttagtcatatatcatacatgtatatatgcatattgcttatctaacaagtaattaactagaataatagtttgnnnn |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
2223547 |
acaccgaattggttaattagtttagttagtcatatatcatacatgtatatatgcatattgcttatctaacaagtaattaaatagaataatggtttgtttt |
2223646 |
T |
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| Q |
212 |
nnnnnnaattaagaagcaaaatacatttatggtatttgaactgcttttggtaccatatcaaaca |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2223647 |
ttttttaattaagaagcaaaatacatttatggtatttgaactgcttttggtaccatatccaaca |
2223710 |
T |
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