View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10498_low_32 (Length: 290)
Name: NF10498_low_32
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 43 - 273
Target Start/End: Complemental strand, 55067741 - 55067518
Alignment:
| Q |
43 |
tttatgttatttatacgctaaaattaggttggagtatcccttgcactctgtttctaacataatcatacaggttaaaaaattcaacaaagaaaaagattgt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
55067741 |
tttatgttatttatacgctaaaattaggttggagtatcccttgcactctgtttctaacataatcatacaggttaaaaaattgaacaaagaaaaagattgt |
55067642 |
T |
|
| Q |
143 |
ttgtttataaatttataagaaacagacatattgaaatggaaaatagagaataccataacaaaaattgcatcttatttctttattcatctcttgtctcttg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55067641 |
ttgtttataaatttataagaaacagacatatagaaatggaaaatagagaataccacaacaaaaattgcatcttatttctttattcatct-------cttg |
55067549 |
T |
|
| Q |
243 |
atatacctaagataaaccctgagttaaaaaa |
273 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
55067548 |
atatacctaaggtaaaccctgagttaaaaaa |
55067518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University