View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_33 (Length: 287)
Name: NF10498_low_33
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 3035742 - 3036012
Alignment:
| Q |
1 |
aaacatataaatatgacaacagtcctaccttatttttggtaaaagacaataatccaaccttaacttacaagcacaacnnnnnnnnnnnnnnnn-tgccta |
99 |
Q |
| |
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||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3035742 |
aaacatatagctatgacaacagtcccatcttatttttggtaaaagacaataatccaaccttaacttacaagcacaacaaaaaaataataaaaaatgccta |
3035841 |
T |
|
| Q |
100 |
atatgatgtaaatatactatccagcacactatactgttaannnnnnnacacaattttgtttctgttgtaaatatatatgtacctaaactatgcatgatta |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035842 |
atatgatgtaaatatactatccagcacactatactgttaatttttttacacaattttgtttctgttgtaaatatatatgtacctaaactatgcatgatta |
3035941 |
T |
|
| Q |
200 |
acttaactagcatcatggttaatcatatgcatgtaatggtttaaggattcttgtctttgcaacctcatttg |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035942 |
acttaactagcatcatggttaatcatatgcatgtaatggtttaaggattcttgtctttgcaacctcatttg |
3036012 |
T |
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