View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_34 (Length: 279)
Name: NF10498_low_34
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 31800658 - 31800740
Alignment:
| Q |
186 |
tcacactatttgaatcaacaatgtgaaattcattaaaacatagcttagttacactcttactcatctagtaaaataacaccttt |
268 |
Q |
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| T |
31800658 |
tcacactatttgaatcaacaatgtgaaattcattaaaacatagcttagttagactcttactcatctagtaaaataacaccttt |
31800740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 31800491 - 31800594
Alignment:
| Q |
18 |
tattcactccatgaaaatttcaaaagttcactaggatattttcttctgcggaaaaagttcactaatatataacatcatcgaatcaaaatccgacagaata |
117 |
Q |
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| T |
31800491 |
tattcactccatgaaaatttcaaaagttcactaggatattttcttctgagg-aaaagttcactgagatataacatcatcaaatccaaatccgacagaata |
31800589 |
T |
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| Q |
118 |
atgtg |
122 |
Q |
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| T |
31800590 |
atgtg |
31800594 |
T |
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