View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_35 (Length: 278)
Name: NF10498_low_35
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 23 - 269
Target Start/End: Original strand, 47473101 - 47473350
Alignment:
| Q |
23 |
cagataaggatgatattccctgtatcattactctagtttaaaaaagcatgcatttgtttgtttacaaaataagacaacaaaccaaccaatatttaataca |
122 |
Q |
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| T |
47473101 |
cagataaggatgatattccctgtatcattactctagtttaaaaaagcatgcatttgtttgtttacaaaataagacaacaaaccaaccaatatttaataca |
47473200 |
T |
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| Q |
123 |
tgattaagatttgatcaattacataaattagcatgtcttagtaatagttccattccatggaaagcaacggaaacagacatataatttaagttctgaaatg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473201 |
tgattaagatttgatcaattacataaattagcatgtcttagtaatagttcaattccatggaaagcaacggaaacagacatataatttaagttctgaaatg |
47473300 |
T |
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| Q |
223 |
---ctataccagggagctaacagcaggcacattttccgtaacccctttgc |
269 |
Q |
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| T |
47473301 |
ctactataccagggagctaacagcaggcacattttccgtaacccctttgc |
47473350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 24802458 - 24802576
Alignment:
| Q |
23 |
cagataaggatgatattccctgtatcattactctagtttaaaaaagcatgcatttgtttgtttacaaaataagacaacaaaccaaccaatatttaataca |
122 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| || |
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| T |
24802458 |
cagataaggatgatatcccctgtatcattactcaagtttaaaaaagcaagcatttgtttgtttacaaaataagacaacaaagcaatcaatatttaattca |
24802557 |
T |
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| Q |
123 |
tgattaagatttgatcaat |
141 |
Q |
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| T |
24802558 |
tgattaagatttgatcaat |
24802576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 47476355 - 47476473
Alignment:
| Q |
23 |
cagataaggatgatattccctgtatcattactctagtttaaaaaagcatgcatttgtttgtttacaaaataagacaacaaaccaaccaatatttaataca |
122 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| || |
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| T |
47476355 |
cagataaggatgatatcccctgtatcattactcaagtttaaaaaagcaagcatttgtttgtttacaaaataagacaacaaagcaatcaatatttaattca |
47476454 |
T |
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| Q |
123 |
tgattaagatttgatcaat |
141 |
Q |
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||||||||||||||||||| |
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| T |
47476455 |
tgattaagatttgatcaat |
47476473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 47485908 - 47485966
Alignment:
| Q |
83 |
tttacaaaataagacaacaaaccaaccaatatttaatacatgattaagatttgatcaat |
141 |
Q |
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||||||||||| | ||||| | ||||||||||||||| ||||||||||||||||||||| |
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| T |
47485908 |
tttacaaaatacgccaacagagcaaccaatatttaattcatgattaagatttgatcaat |
47485966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 47485994 - 47486064
Alignment:
| Q |
199 |
acatataatttaagttctgaaatgctataccagggagctaacagcaggcacattttccgtaacccctttgc |
269 |
Q |
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||||||||||||||| || ||||||| ||||||||||||||| || | |||||||||||||| ||||||| |
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| T |
47485994 |
acatataatttaagtgctaaaatgctttaccagggagctaactgctgaaacattttccgtaactcctttgc |
47486064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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