View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_39 (Length: 274)
Name: NF10498_low_39
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 128 - 263
Target Start/End: Original strand, 47276050 - 47276185
Alignment:
| Q |
128 |
gaagcagaccgtggtattgacatgatcggagacgagtttctaaatccgagagatgagtggaatcgccgtcgacggcgagaacacgcattccgattggaaa |
227 |
Q |
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| T |
47276050 |
gaagcagaccgtggtattgacatgatcggagacgagtttctaaatccgagagatgagtggaatcgccgtcgacggcgagaacacgcattccgattggaaa |
47276149 |
T |
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| Q |
228 |
ccggtcactggagtcgtccataattctctcttctct |
263 |
Q |
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| T |
47276150 |
ccggtcactggagtcgtccataattctctcttctct |
47276185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 47275923 - 47276017
Alignment:
| Q |
1 |
aaagaattaccgtatctctctgcatatacatatcctttacttatcaattatgatcatcatgcattatacacataaattggacataaagtatgaat |
95 |
Q |
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| T |
47275923 |
aaagaattaccgtatctctctgcatatacatatcctttacttatcaattatgatcatcatgcattatacacataaattggacataaagtatgaat |
47276017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 263
Target Start/End: Original strand, 38099474 - 38099598
Alignment:
| Q |
139 |
tggtattgacatgatcggagacgagtttctaaatccgagagatgagtggaatcgccgtcgacggcgagaacacgcattccgattggaaaccggtcactgg |
238 |
Q |
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| T |
38099474 |
tggtattgacatgttcggaggcgagtttctaaatccgagagataattggaatcaccgtctacgacaagaacatgcattccgatgggaaaccgatcactgg |
38099573 |
T |
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| Q |
239 |
agtcgtccataattctctcttctct |
263 |
Q |
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| T |
38099574 |
aatcatccattattctctcttctct |
38099598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 263
Target Start/End: Original strand, 47281431 - 47281566
Alignment:
| Q |
128 |
gaagcagaccgtggtattgacatgatcggagacgagtttctaaatccgagagatgagtggaatcgccgtcgacggcgagaacacgcattccgattggaaa |
227 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||| | ||| |||| ||||| ||||||||||||||||| ||||| |
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| T |
47281431 |
gaagcagaccgtggtattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaa |
47281530 |
T |
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| Q |
228 |
ccggtcactggagtcgtccataattctctcttctct |
263 |
Q |
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| T |
47281531 |
ccgatcactgaaatcatccattattctctcttctct |
47281566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 49062346 - 49062447
Alignment:
| Q |
134 |
gaccgtggtattgacatgatcggagacgagtttctaaatccgagagatgagtggaatcgccgtcgacggcgagaacacgcattccgattggaaaccggtc |
233 |
Q |
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||||||||||||||||| ||||||| ||||||| ||| || ||||| ||| | |||| |||| ||||||||||||||||||||||| ||||| ||||| |
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| T |
49062346 |
gaccgtggtattgacatcttcggagaagagtttccaaaaccaagagacaagttggatcgtcgtcaacggcgagaacacgcattccgataggaaaacggtc |
49062445 |
T |
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| Q |
234 |
ac |
235 |
Q |
| |
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|| |
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|
| T |
49062446 |
ac |
49062447 |
T |
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