View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10498_low_43 (Length: 262)
Name: NF10498_low_43
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 30361042 - 30360797
Alignment:
| Q |
6 |
agaagcagagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttccaaagaaattttaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
30361042 |
agaagcacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttcaaaagaaatttaaa |
30360943 |
T |
|
| Q |
106 |
caaccaggacnnnnnnnncttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggac |
205 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30360942 |
caaccaggacttttttttcatttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggac |
30360843 |
T |
|
| Q |
206 |
ccaatcccagttccagagaaggtccgtaaaccccttacacaggttc |
251 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30360842 |
ccaatcccagttccagagaaggtccgcaaaccccttacacaggttc |
30360797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 19916438 - 19916201
Alignment:
| Q |
6 |
agaagcagagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagacttttttt-aagcatgcgtattttcttccaaagaaatttta |
104 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||||| ||||||||||| | ||| |||||||||| ||||||||||| |||||| |||||||||| | |
|
|
| T |
19916438 |
agaagcacagatgagaaaatttaaggcactgccagta--aaaagagtgagaattcaggacttttttttaagcatgcgtactttctttgaaagaaatttaa |
19916341 |
T |
|
| Q |
105 |
acaaccaggacnnnnnnnn-cttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcaggg |
203 |
Q |
| |
|
|| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19916340 |
ac---caatactttttttatcctttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatatgaatgtaccttgcaggg |
19916244 |
T |
|
| Q |
204 |
acccaatcccagttccagagaaggtccgtaaaccccttacaca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19916243 |
acccaatcccagttccagagaaggtccgcaaaccccttacaca |
19916201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University