View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_47 (Length: 251)
Name: NF10498_low_47
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 44061536 - 44061306
Alignment:
| Q |
11 |
cacagagttccttgttaccgtgttcttgatgacaatggtgaaccaatttttgggactgattttgttcaggttagcatttactaactcacttcattttcat |
110 |
Q |
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| T |
44061536 |
cacagagttccttgttaccgtgttcttgatgataatggtgaaccaatttttgggactgattttgttcaggttagcatttactaactcacttcattttcat |
44061437 |
T |
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| Q |
111 |
tgtttttgaaagtg-aaaataaattaatatcttagaagtgaaattggatgttacttaggtgagtgaggattttgctgttaaaatgtacaataacatggtt |
209 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44061436 |
tgtttttgaaagtgaaaaataaattaatatcttagaagtgaaattggttgttacttaggtgagtgaggattttgctgttaaaatgtacaataacatggtt |
44061337 |
T |
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| Q |
210 |
gcattacaaacaatggacactatcttctatg |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44061336 |
gcattacaaacaatggacactatcttctatg |
44061306 |
T |
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