View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_48 (Length: 250)
Name: NF10498_low_48
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 45519507 - 45519385
Alignment:
| Q |
121 |
tgcctactttcttgttcttgaattagtaggcaattttaaacaaatccattttgcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgca |
220 |
Q |
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| T |
45519507 |
tgcctactttcttgttcttgaattagtaggcaattttaaacaaatccattttgcaaattccagctaacatctaactgcttcaaggtcaaacttgaatgca |
45519408 |
T |
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| Q |
221 |
attattcaattgactctctgcta |
243 |
Q |
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| T |
45519407 |
attattcaattgactctatgcta |
45519385 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45519627 - 45519569
Alignment:
| Q |
1 |
aaaccaataacatacttgtattttttctattcccttatactcaaccactcaattccaac |
59 |
Q |
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| T |
45519627 |
aaaccaataacatacttgtattttttctattcccttatactcaaccactcaattccaac |
45519569 |
T |
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