View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_49 (Length: 250)
Name: NF10498_low_49
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28733324 - 28733088
Alignment:
| Q |
1 |
tttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctgaagtttgctcacaagttcctccagtgagcttacttg |
100 |
Q |
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| T |
28733324 |
tttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctgaagtttgctcacaagttcctccagtgagcttacttg |
28733225 |
T |
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| Q |
101 |
agaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttctaatcggagcgtttccactgtcttatttgcagcttcc |
200 |
Q |
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| T |
28733224 |
agaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttctaatcggagcgtttccactgtcttatttgcagcttcc |
28733125 |
T |
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| Q |
201 |
aattgcatttgagttgtaccaagtgtttccaatgcct |
237 |
Q |
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| T |
28733124 |
aattgcatttgagttgtaccaactgtttccaatgcct |
28733088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 22110127 - 22109981
Alignment:
| Q |
65 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
164 |
Q |
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| T |
22110127 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
22110028 |
T |
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| Q |
165 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
211 |
Q |
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| T |
22110027 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
22109981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 40584462 - 40584608
Alignment:
| Q |
65 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
164 |
Q |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
40584462 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
40584561 |
T |
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| Q |
165 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
211 |
Q |
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| T |
40584562 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
40584608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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