View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_5 (Length: 451)
Name: NF10498_low_5
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 9786699 - 9786287
Alignment:
| Q |
20 |
atgaatggagtcctgtttggtgaaatattgagttatcttctacatgaattcaccatttcaaattgtaaactgtaaataaacctctcttattcctccacat |
119 |
Q |
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| T |
9786699 |
atgaatggagtcctatttggtgaaatattgagttatcttctacatgaattcaccatttcaaattgtaaactgtaaataaacctctcttattcctccacat |
9786600 |
T |
|
| Q |
120 |
ttcacactagtattcttcatttccttgtttctgttaccatgcattttatgaaatatgaattgcatgcatattaagatatgaatcacatagtcatgtttta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9786599 |
ttcacactagtattcttcatttccttgtttctgttaccatgcattttatgaaatatgaattgcatgcatatttagatatgaatcacatagtcatgtttta |
9786500 |
T |
|
| Q |
220 |
atattgtgaaataaaataatcaccaggaacaagtcaaatttgacaagtagtttgattagttggccatgactaagccattgaggcaatagtagttagtctg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9786499 |
atattgtgaaataaaataatcaccaggaacaagtcaaatttgacaagtagtttgattagttggccatgactaagccattgaggcaatagtagttagtctg |
9786400 |
T |
|
| Q |
320 |
tcattaaatataatcagcatatttgtattcttctttggctcttaatatttaagataacaatgaacaaattttcttcatttctttatcatagcaggtccaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9786399 |
tcattaaatataatcagcatatttgtattcttctttggctcttaatatttaagataacaatgaacaaattttcttcatttctttatcatagcaggtccaa |
9786300 |
T |
|
| Q |
420 |
atatgttcagaaa |
432 |
Q |
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||||||||||||| |
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| T |
9786299 |
atatgttcagaaa |
9786287 |
T |
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