View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10498_low_51 (Length: 250)
Name: NF10498_low_51
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 11536720 - 11536961
Alignment:
| Q |
1 |
ccactcttttccctcgttctctctttattctattttaggtgtacaattgattaagtttacaaatgactttcacttctatttatagagtttctaaagttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11536720 |
ccactcttttccctcgttctctctttattctattttaggtgtacaattgattaagtttacaaatgactttcacttctatttatagagtttctaaagttac |
11536819 |
T |
|
| Q |
101 |
agattcgctatgtgtggaaagcgtgcttagaaaattgaggtttcttcaaatgaggaaaaaaccagccgttcttcgaatatttttccttaaatcaaccttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
11536820 |
agattcgctatgtgtggaaagcgtgcttagaaaattgaggtttctttaaaggaggaaaaaaccagccgttcttcaaatatttttccttaaatcgaccttg |
11536919 |
T |
|
| Q |
201 |
ctcactaagcacaacttttgtgcttagcgaaatgcctttgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11536920 |
ctcactaagcacaacttttgtgcttagcgaaatgcctttgct |
11536961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 319523 - 319612
Alignment:
| Q |
20 |
tctctttattctattttaggtgtacaattgattaagtttacaaatgactttcacttctatttatagagtttctaaagttacagattcgct |
109 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||| ||||||||||||| || ||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
319523 |
tctctctattctattttgggtttacaattgattgagtttacaaatgatttgcacttttatttatagagtttctgaagttgcagattcgct |
319612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 1467338 - 1467252
Alignment:
| Q |
20 |
tctctttattctattttaggtgtacaattgattaagtttacaaatgactttcacttctatttatagagtttctaaagttacagattc |
106 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||| | ||||||| ||||| ||||||| |
|
|
| T |
1467338 |
tctctctattctattttgggtttacaattgattgagtttacaaatgacttgcacttctatttgttgagtttccgaagttgcagattc |
1467252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 227
Target Start/End: Complemental strand, 17631790 - 17631607
Alignment:
| Q |
44 |
caattgattaagtttacaaatgactttcacttctatttatagagtttctaaagttacagattcgctatgtgtggaaagcgtgcttagaaaattgaggttt |
143 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||||| ||||||||| ||||| |||||| |||| | |||||||| |||||||| ||| | |||| |
|
|
| T |
17631790 |
caattgattacatttagaaatgacttacacttctatttagagagtttctgaagttgcagatttgctaagcatggaaagcatgcttagagaatccaagttt |
17631691 |
T |
|
| Q |
144 |
cttcaaatgaggaaaaaaccagccgttcttcgaatatttttccttaaatcaaccttgctcactaagcacaacttttgtgcttag |
227 |
Q |
| |
|
|||||| || |||||||||| |||||| |||||||||||| ||| |||||| ||| |||||| ||||||||||||| |
|
|
| T |
17631690 |
cttcaagggatgaaaaaaccaattgttcttaatatatttttcctttaatttaccttgatcattaagcatgccttttgtgcttag |
17631607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 24465555 - 24465488
Alignment:
| Q |
31 |
tattttaggtgtacaattgattaagtttacaaatgactttcacttctatttatagagtttctaaagtt |
98 |
Q |
| |
|
|||||| ||| || |||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
24465555 |
tattttgggtttaaaattgattgagtttacaaatgacttgcacttctatttatagagtttataaagtt |
24465488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 34744621 - 34744571
Alignment:
| Q |
42 |
tacaattgattaagtttacaaatgactttcacttctatttatagagtttct |
92 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
34744621 |
tacaattgattacatatacaaatgacttgcacttctatttatagagtttct |
34744571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 22959311 - 22959394
Alignment:
| Q |
4 |
ctcttttccctcgttctctctttattctattttaggtgtacaattgattaagtttacaaatgactttcacttctatttatagag |
87 |
Q |
| |
|
|||| |||||||||||||||| ||| |||| | | |||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
22959311 |
ctctcttccctcgttctctctctataatattgtgaatttacaattgattatatttacaaatgacttgcacttctatttatagag |
22959394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University