View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_53 (Length: 250)
Name: NF10498_low_53
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_53 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 37154698 - 37154454
Alignment:
| Q |
6 |
agtagcaaaggaaccggcaaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttgtcaaaggccaacaattgatgagtgagat |
105 |
Q |
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| T |
37154698 |
agtaacaaaggaaccggcaaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttttcaaaggccaacaattgatgagtgagat |
37154599 |
T |
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| Q |
106 |
tgagttagaacatatgaaacgtataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagtatgtcc |
205 |
Q |
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| T |
37154598 |
tgagttagaacatatgaaacatataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagtatgtcc |
37154499 |
T |
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| Q |
206 |
aaaatacatgtgcagtccaaagtccaatgataacagctgaatttc |
250 |
Q |
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| T |
37154498 |
aaaatacatgtgcagtccaaagtccaatgataacagctgaatttc |
37154454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 37200053 - 37199809
Alignment:
| Q |
6 |
agtagcaaaggaaccggcaaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttgtcaaaggccaacaattgatgagtgagat |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37200053 |
agtaacaaaggaaccggcaaacatatcaacgccgcaatcttgaaaaccagtccaaacctctttgttctgttttcaaaggccaacaattgatgagtgagat |
37199954 |
T |
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| Q |
106 |
tgagttagaacatatgaaacgtataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagtatgtcc |
205 |
Q |
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| T |
37199953 |
tgagttagaacatatgaaacatataatcatacatagtttgcaattgcaagtccaaagaatttggaaagaaagtacaaccttgctacacaatagtatgtcc |
37199854 |
T |
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| Q |
206 |
aaaatacatgtgcagtccaaagtccaatgataacagctgaatttc |
250 |
Q |
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| T |
37199853 |
aaaatacatgtgcagtccaaagtccaatgataacagctgaatttc |
37199809 |
T |
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