View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_low_56 (Length: 244)

Name: NF10498_low_56
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_low_56
NF10498_low_56
[»] chr2 (8 HSPs)
chr2 (17-244)||(33081529-33081756)
chr2 (17-244)||(33071826-33072052)
chr2 (17-82)||(33090197-33090262)
chr2 (17-82)||(33097693-33097758)
chr2 (17-149)||(33064583-33064714)
chr2 (17-69)||(33050343-33050394)
chr2 (116-207)||(33090265-33090354)
chr2 (116-207)||(33097761-33097850)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 33081529 - 33081756
Alignment:
Q  17 aatctctcaggagacaaagataaagatcaacctgttgttgttttaacaactgaatgcatgccaattaggactgaataagcttgtgtttggaaccacagtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33081529 aatctctcaggagacaaagataaagatcaacctgttgttgttttaacgactgaatgcatgccaattaggactgaataagcttgtgtttggaaccacagtg 33081628  T
Q  117 acagctcctttagatgcacggcatgagcgaaactacaacttcgagccttagactcaacgtgcggagaaaactctttgaatgtgaaagcaaaaacaggcta 216  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33081629 acagctcctttagatgcacggcttgagcgaaactataacttggagccttagactcaatgtgcggagaaaactctttgaatgtgaaagcaaaaacaggcta 33081728  T
Q  217 aaaaatgattacaggttgtaaataacat 244  Q
    |||||| |||| ||||||||||||||||    
T  33081729 aaaaattattagaggttgtaaataacat 33081756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 33071826 - 33072052
Alignment:
Q  17 aatctctcaggagacaaagataaagatcaacctgttgttgttttaacaactgaatgcatgccaattaggactgaataagcttgtgtttggaaccacagtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33071826 aatctctcaggagacaaagataaagatcaacctgttgttgttttaacgactgaatgcatgccaattaggactgaataagcttgtgtttggaaccacagtg 33071925  T
Q  117 acagctcctttagatgcacggcatgagcgaaactacaacttcgagccttagactcaacgtgcggagaaaactctttgaatgtgaaagcaaaaacaggcta 216  Q
    ||||||||||| |||||||||| |||||||||||| ||||| |||| |||||||||||||| ||||||||||||||| ||||| |||| || ||||||||    
T  33071926 acagctccttt-gatgcacggcgtgagcgaaactataacttggagctttagactcaacgtgtggagaaaactctttgtatgtggaagctaacacaggcta 33072024  T
Q  217 aaaaatgattacaggttgtaaataacat 244  Q
    ||||||| ||||| ||||||| ||||||    
T  33072025 aaaaatggttacatgttgtaattaacat 33072052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 33090197 - 33090262
Alignment:
Q  17 aatctctcaggagacaaagataaagatcaacctgttgttgttttaacaactgaatgcatgccaatt 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33090197 aatctctcaggagacaaaggtaaagatcaacctgttgttgttttaacaactgaatgcatgccaatt 33090262  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 33097693 - 33097758
Alignment:
Q  17 aatctctcaggagacaaagataaagatcaacctgttgttgttttaacaactgaatgcatgccaatt 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33097693 aatctctcaggagacaaaggtaaagatcaacctgttgttgttttaacaactgaatgcatgccaatt 33097758  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 33064583 - 33064714
Alignment:
Q  17 aatctctcaggagacaaagataaagatcaacctgttgttgttttaacaactgaatgcatgccaattaggactgaataagcttgtgtttggaaccacagtg 116  Q
    |||||||| || |||||||||||||  |||||  ||||||||| ||||||| ||||| ||||||||||||||  ||||| |||||||||||||||| |||    
T  33064583 aatctctcgggcgacaaagataaaggccaaccaattgttgttt-aacaacttaatgcctgccaattaggactatataagtttgtgtttggaaccaccgtg 33064681  T
Q  117 acagctcctttagatgcacggcatgagcgaaac 149  Q
     |||||| |||||||||||||  ||||||||||    
T  33064682 gcagctcatttagatgcacggtgtgagcgaaac 33064714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 33050343 - 33050394
Alignment:
Q  17 aatctctcaggagacaaagataaagatcaacctgttgttgttttaacaactga 69  Q
    ||||||||||| |||||||||||||| |||||| |||||| ||||||||||||    
T  33050343 aatctctcaggggacaaagataaagaccaacctattgttg-tttaacaactga 33050394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 33090265 - 33090354
Alignment:
Q  116 gacagctcctttagatgcacggcatgagcgaaactacaacttcgagccttagactcaacgtgcggagaaaactctttgaatgtgaaagcaaa 207  Q
    |||||||||||||||||||  |  |||||||||||| ||||  |||| ||| ||||| | | |||||||||||||||||||||  |||||||    
T  33090265 gacagctcctttagatgcagtg--tgagcgaaactataactcggagctttaaactcagctttcggagaaaactctttgaatgtcgaagcaaa 33090354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 33097761 - 33097850
Alignment:
Q  116 gacagctcctttagatgcacggcatgagcgaaactacaacttcgagccttagactcaacgtgcggagaaaactctttgaatgtgaaagcaaa 207  Q
    |||||||||||||||||||  |  |||||||||||| ||||  |||| ||| ||||| | | |||||||||||||||||||||  |||||||    
T  33097761 gacagctcctttagatgcagtg--tgagcgaaactataactcggagctttaaactcagctttcggagaaaactctttgaatgtcgaagcaaa 33097850  T

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