View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_58 (Length: 244)
Name: NF10498_low_58
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52088193 - 52088412
Alignment:
| Q |
1 |
caattcaacaaacttcacctctcgttgacacgtcattaccacctcctacacaaccgatgttagttcatgtactaactaactgatgactagatctcataat |
100 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
52088193 |
caattcaacaaacttcacctctcgttgacacatcattaccacctcctacacaaccgatgttagttcatgtagtaact----gatgactagatctcataat |
52088288 |
T |
|
| Q |
101 |
agtgtatttggaaaactttgtgtgtatatgatttatatcatattactnnnnnnnnnnnnnnnnn---taatattgttatttgtattgctatcactcaaac |
197 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
52088289 |
ggtgtatttggaaaactttgtgtgtgtatgatttatatcatattactattatcatcatcatcatcattaatattgttatttgtattgctatcactaaaac |
52088388 |
T |
|
| Q |
198 |
cgggtgctttgtgtctgtttgtcc |
221 |
Q |
| |
|
||||| ||||||||||||||||| |
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|
| T |
52088389 |
ggggtgttttgtgtctgtttgtcc |
52088412 |
T |
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