View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_low_60 (Length: 241)

Name: NF10498_low_60
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_low_60
NF10498_low_60
[»] chr4 (2 HSPs)
chr4 (19-241)||(26725474-26725696)
chr4 (19-241)||(26733788-26734010)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 26725696 - 26725474
Alignment:
Q  19 gtcataagcatctagagcctcaagtttcttcattccgaaagtgatgttgccggggaagttaccggagaagaggttgtgagagatgttgaggattctaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26725696 gtcataagcatctagagcctcaagtttcttcattccgaaagtgatgttgccggggaagttaccggagaagaggttgtgagagatgttgaggattctaaga 26725597  T
Q  119 gaagtaagtttggatagctcagttggaagctcgccggtgagattgtccatagtgattgtaaggctctcgagcatgttcaactctccgatctccttggaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26725596 gaagtaagtttggatagctcagttggaagctcgccggtgagattgtccatagtgattgtaaggctctcgagcatgttcaactctccgatctccttggaaa 26725497  T
Q  219 ggtgtccgaagagtggaacttgc 241  Q
    |||||||||||||||||||||||    
T  26725496 ggtgtccgaagagtggaacttgc 26725474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 26734010 - 26733788
Alignment:
Q  19 gtcataagcatctagagcctcaagtttcttcattccgaaagtgatgttgccggggaagttaccggagaagaggttgtgagagatgttgaggattctaaga 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26734010 gtcataagcatctagagcctcaagtttcttcattccaaaagtgatgttgccggggaagttaccggagaagaggttgtgagagatgttgaggattctaaga 26733911  T
Q  119 gaagtaagtttggatagctcagttggaagctcgccggtgagattgtccatagtgattgtaaggctctcgagcatgttcaactctccgatctccttggaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26733910 gaagtaagtttggatagctcagttggaagctcgccggtgagattgtccatagtgattgtaaggctctcgagcatgttcaactctccgatctccttggaaa 26733811  T
Q  219 ggtgtccgaagagtggaacttgc 241  Q
    |||||||||||||||||||||||    
T  26733810 ggtgtccgaagagtggaacttgc 26733788  T

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