View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10498_low_61 (Length: 240)

Name: NF10498_low_61
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10498_low_61
NF10498_low_61
[»] chr3 (3 HSPs)
chr3 (79-211)||(42904774-42904899)
chr3 (89-142)||(50211716-50211769)
chr3 (79-129)||(23091315-23091365)
[»] chr5 (3 HSPs)
chr5 (1-85)||(38595032-38595116)
chr5 (86-142)||(6752706-6752762)
chr5 (86-142)||(27183644-27183700)
[»] scaffold0369 (1 HSPs)
scaffold0369 (108-182)||(11987-12054)
[»] chr8 (4 HSPs)
chr8 (89-142)||(28964479-28964532)
chr8 (96-142)||(174239-174285)
chr8 (103-142)||(42064183-42064222)
chr8 (96-132)||(16089163-16089199)
[»] scaffold0060 (1 HSPs)
scaffold0060 (96-142)||(29402-29448)
[»] scaffold0062 (1 HSPs)
scaffold0062 (83-126)||(68796-68839)
[»] chr2 (1 HSPs)
chr2 (83-126)||(15720239-15720282)
[»] chr6 (1 HSPs)
chr6 (89-131)||(14904022-14904064)
[»] chr7 (2 HSPs)
chr7 (89-125)||(11612746-11612782)
chr7 (86-126)||(22055712-22055752)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 42904899 - 42904774
Alignment:
Q  79 ttttaagcatggtaataaaaacccgaccggaccggccggttcaaccggttggatcaggaaccgggaaccggacaagcatccggtccggatgactataaaa 178  Q
    ||||| |||||||||||||||||  |||||||||| |||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||    
T  42904899 ttttaggcatggtaataaaaaccgaaccggaccggtcggttcaaccggttggatc-------gagaaccggacaagcatccggtccggatgactataaaa 42904807  T
Q  179 accgctcggtcaaaaaaccggggagtcaaccgg 211  Q
    |||||||||||||||||| ||||||||||||||    
T  42904806 accgctcggtcaaaaaactggggagtcaaccgg 42904774  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 50211769 - 50211716
Alignment:
Q  89 ggtaataaaaacccgaccggaccggccggttcaaccggttggatcaggaaccgg 142  Q
    |||||| |||||| ||||||||||||||||||||||||||| | | ||||||||    
T  50211769 ggtaattaaaaccggaccggaccggccggttcaaccggttgaaccgggaaccgg 50211716  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 23091315 - 23091365
Alignment:
Q  79 ttttaagcatggtaataaaaacccgaccggaccggccggttcaaccggttg 129  Q
    |||||| ||||||| | |||||| |||||||||||||||||||| ||||||    
T  23091315 ttttaatcatggtagtgaaaaccggaccggaccggccggttcaatcggttg 23091365  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38595116 - 38595032
Alignment:
Q  1 cattaattccctagccctacgagcacacaaatgtaactttaactacaacctataaatccttgatgtggttgtgtatacttttaag 85  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38595116 cattaattcccttgccctacgagcacacaaatgtaactttaactacaacctataaatccttgatgtgattgtgtatacttttaag 38595032  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 6752706 - 6752762
Alignment:
Q  86 catggtaataaaaacccgaccggaccggccggttcaaccggttggatcaggaaccgg 142  Q
    ||||||| | |||||| ||||||||||||||||||||||||||| | | ||||||||    
T  6752706 catggtagtgaaaaccggaccggaccggccggttcaaccggttgaaccgggaaccgg 6752762  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 27183644 - 27183700
Alignment:
Q  86 catggtaataaaaacccgaccggaccggccggttcaaccggttggatcaggaaccgg 142  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||| | | ||||||||    
T  27183644 catggtaattaaaaccggaccggaccggccggttcaaccgattgaaccgggaaccgg 27183700  T

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Target: scaffold0369 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 11987 - 12054
Alignment:
Q  108 gaccggccggttcaaccggttggatcaggaaccgggaaccggacaagcatccggtccggatgactataaaaaccg 182  Q
    ||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||||    
T  11987 gaccggccggttcaaccggttgga-------ccgggaaccgaacaagcatccggtccggatgactataaaaaccg 12054  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 28964479 - 28964532
Alignment:
Q  89 ggtaataaaaacccgaccggaccggccggttcaaccggttggatcaggaaccgg 142  Q
    ||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||    
T  28964479 ggtaataaaaaccggaccggaccggccggtccaaccggttgaatcgggaaccgg 28964532  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 174239 - 174285
Alignment:
Q  96 aaaacccgaccggaccggccggttcaaccggttggatcaggaaccgg 142  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||||    
T  174239 aaaaccggaccggaccggccggttcaaccggttggaccgggaaccgg 174285  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 42064222 - 42064183
Alignment:
Q  103 gaccggaccggccggttcaaccggttggatcaggaaccgg 142  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  42064222 gaccggaccggccggttcgaccggttgaatcaggaaccgg 42064183  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 16089199 - 16089163
Alignment:
Q  96 aaaacccgaccggaccggccggttcaaccggttggat 132  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  16089199 aaaaccggaccggaccagccggttcaaccggttggat 16089163  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 29448 - 29402
Alignment:
Q  96 aaaacccgaccggaccggccggttcaaccggttggatcaggaaccgg 142  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||||    
T  29448 aaaaccggaccggaccggccggtacaaccggttggaccaggaaccgg 29402  T

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Target: scaffold0062 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 68796 - 68839
Alignment:
Q  83 aagcatggtaataaaaacccgaccggaccggccggttcaaccgg 126  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||    
T  68796 aagcaaggtagtaaaaaccggaccggaccggccggttcaaccgg 68839  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 15720239 - 15720282
Alignment:
Q  83 aagcatggtaataaaaacccgaccggaccggccggttcaaccgg 126  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||    
T  15720239 aagcaaggtagtaaaaaccggaccggaccggccggttcaaccgg 15720282  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 14904022 - 14904064
Alignment:
Q  89 ggtaataaaaacccgaccggaccggccggttcaaccggttgga 131  Q
    |||||| |||||| |||||||||| ||||||||||||||||||    
T  14904022 ggtaatgaaaaccggaccggaccgaccggttcaaccggttgga 14904064  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 11612782 - 11612746
Alignment:
Q  89 ggtaataaaaacccgaccggaccggccggttcaaccg 125  Q
    |||| |||||||| |||||||||||||||||||||||    
T  11612782 ggtattaaaaaccggaccggaccggccggttcaaccg 11612746  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 22055752 - 22055712
Alignment:
Q  86 catggtaataaaaacccgaccggaccggccggttcaaccgg 126  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  22055752 catggtagtaaaaatcggaccggaccggccggttcaaccgg 22055712  T

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