View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_66 (Length: 238)
Name: NF10498_low_66
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11536422 - 11536199
Alignment:
| Q |
1 |
agattatatatagtttctatctcccaagagatcgtgggtagatctatgtatannnnnnnnagcatggaccattgaaacaaccggtttttt-gccatcgag |
99 |
Q |
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| T |
11536422 |
agattatatatagtttctatctcccaagagatcgcgggtagatctatgtatattttttttagcatggaccattgaaacaatcgatttttttgccatcgag |
11536323 |
T |
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| Q |
100 |
catcgaaagtccgttgtctatatgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatctgaggcatgaaaagt |
199 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11536322 |
catcgaaagtccgttgtctctctgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatatgaggcatgaaaagt |
11536223 |
T |
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| Q |
200 |
atacaattgattaagaggaattac |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
11536222 |
atacaattgattaagaggaattac |
11536199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 1467767 - 1467873
Alignment:
| Q |
113 |
ttgtctatatgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatctgaggcatgaaaagtatacaattgatta |
212 |
Q |
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|||| ||||||||||||| |||||||||| ||||||||||||||| | |||||||| |||||||| ||| |||||||| ||||||||||||| ||||| |
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| T |
1467767 |
ttgtttatatgttatttcatgtcgttaacattagtttggagacgtacgttgaggaaatggtggagttatatttgaggcataaaaagtatacaatcgatta |
1467866 |
T |
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| Q |
213 |
agaggaa |
219 |
Q |
| |
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||||||| |
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| T |
1467867 |
agaggaa |
1467873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 219
Target Start/End: Complemental strand, 318560 - 318428
Alignment:
| Q |
87 |
ttttgccatcgagcatcgaaagtccgttgtctatatgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatctg |
186 |
Q |
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| T |
318560 |
tttttccatcgagcattggaagttagttgtttctatgctatttcgcgtcgttaaccttggtttggagacgtacaccgaggtaagggtggagttatagatg |
318461 |
T |
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| Q |
187 |
aggcatgaaaagtatacaattgattaagaggaa |
219 |
Q |
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| T |
318460 |
agacataaaaagtatacaatcaattaataggaa |
318428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 12840327 - 12840228
Alignment:
| Q |
120 |
tatgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatctgaggcatgaaaagtatacaattgattaagaggaa |
219 |
Q |
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| T |
12840327 |
tatgtcatttctcgtcgttaagcttagtttggaaacgtacactgaggaaaggatggagttatatttgaggcataaaaagtatacaattgattaagaggaa |
12840228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 17636126 - 17636259
Alignment:
| Q |
87 |
ttttgccatcgagcatcgaaagtccgttgtctatatgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatctg |
186 |
Q |
| |
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||||||| |||||||||| | ||| ||||| | ||||||||||| ||| ||||| ||||| ||| || || | ||||||| |||||||| |||| | |
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| T |
17636126 |
ttttgccgtcgagcatcggatgtcagttgtttctatgttatttcccgtcattaactttagtctggtgatgtaagcggaggaaagggtggagttatatcag |
17636225 |
T |
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| Q |
187 |
aggcatgaaaagtatacaattgattaagaggaat |
220 |
Q |
| |
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|| ||| |||||||||| || ||||||||||||| |
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| T |
17636226 |
agtcataaaaagtataccatcgattaagaggaat |
17636259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 21557046 - 21556904
Alignment:
| Q |
74 |
gaaacaaccggttttttgccatcgagcatcgaaagtccgttgtctatatgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggt |
173 |
Q |
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||||||| |||| | |||||| | ||||| ||||||| ||||| | ||| ||||||| |||||||||||||||||||||| || || | | |||||||| |
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| T |
21557046 |
gaaacaatcggtatgttgccaccaagcatggaaagtcagttgtttctatattatttcacgtcgttaaccttagtttggagatgtacaataaagaaaaggt |
21556947 |
T |
|
| Q |
174 |
ggagtagtatctgaggcatgaaaagtatacaattgattaagag |
216 |
Q |
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| T |
21556946 |
agagttatgtatgaggcataaaaaatatacaatcgattaagag |
21556904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 13306860 - 13306954
Alignment:
| Q |
122 |
tgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatctgaggcatgaaaagtatacaattgattaagag |
216 |
Q |
| |
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|||||||| |||||||||| ||| |||||||||||| | || |||||| |||||||| ||| |||||| | ||||||||| ||| ||||||||| |
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| T |
13306860 |
tgttattttgtgtcgttaaactttgtttggagacgtacgcttaggaaagggtggagttatatatgaggccttaaaagtatataatcgattaagag |
13306954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 13318447 - 13318338
Alignment:
| Q |
107 |
agtccgttgtctatatgttatttcgtgtcgttaaccttagtttggagacgtgcactgaggaaaaggtggagtagtatctgaggcatgaaaagtatacaat |
206 |
Q |
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|||| ||||||| ||||||||| | | |||||| ||| |||||||||| | | ||||| ||| |||||||| ||| |||| ||| ||||||||||||| |
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| T |
13318447 |
agtcagttgtctccatgttattttgcgacgttaaactttgtttggagacctacgctgagaaaatggtggagttatatatgagacattaaaagtatacaat |
13318348 |
T |
|
| Q |
207 |
tgattaagag |
216 |
Q |
| |
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|||||||||| |
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|
| T |
13318347 |
tgattaagag |
13318338 |
T |
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