View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_69 (Length: 229)
Name: NF10498_low_69
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_69 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28723420 - 28723207
Alignment:
| Q |
1 |
gcaagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaaga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28723420 |
gcaagaattcatggatttggcaactaaagttggatttagtggcatcagatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaaga |
28723321 |
T |
|
| Q |
101 |
gcatgtccttaatttggtgtctttgggtggatttattattctctctcctatgacttgagtttagtactacttgtactcgtttttatttttaatacataaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28723320 |
gcatgtccttaatttggtgtctttgggtggatttattattctctctcctatgacttgagtttagtactacttgtactcgtttttatttttaatacataaa |
28723221 |
T |
|
| Q |
201 |
catatacatatata |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28723220 |
catatacatatata |
28723207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28731062 - 28730849
Alignment:
| Q |
1 |
gcaagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaaga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731062 |
gcaagaattcatggatttggcaactaaagttggatttagtggcatcagatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaaga |
28730963 |
T |
|
| Q |
101 |
gcatgtccttaatttggtgtctttgggtggatttattattctctctcctatgacttgagtttagtactacttgtactcgtttttatttttaatacataaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28730962 |
gcatgtccttaatttggtgtctttgggtggatttattattctctctcctatgacttgagtttagtactacttgtactcgtttttatttttaatacataaa |
28730863 |
T |
|
| Q |
201 |
catatacatatata |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
28730862 |
catatacatatata |
28730849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28708061 - 28707920
Alignment:
| Q |
1 |
gcaagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaaga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| || |
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| T |
28708061 |
gcaagaattcatggatttggcaactaaagttggatttagtggcatcagatatgaatgtcgtgtctgtaatttctgggttatggagttctttaagtaatga |
28707962 |
T |
|
| Q |
101 |
gcatgtcct----taatttggtgtctttgggtggatttatta |
138 |
Q |
| |
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||||| || | |||||||||||||||||||| ||||| |
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| T |
28707961 |
acatgtactagtgttctttggtgtctttgggtggatctatta |
28707920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28623820 - 28623715
Alignment:
| Q |
1 |
gcaagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaaga |
100 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||| ||||| | ||||||||||||||| |||| || ||||||||||||||||||||||||||| |
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| T |
28623820 |
gcaagaattcattgatttggcaactagagttggatttagaggcataagatatgaatgttgtgttcgtaacttatgggttatggagttctttaagtaaaga |
28623721 |
T |
|
| Q |
101 |
gcatgt |
106 |
Q |
| |
|
|||||| |
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|
| T |
28623720 |
gcatgt |
28623715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 28736679 - 28736575
Alignment:
| Q |
2 |
caagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaagag |
101 |
Q |
| |
|
|||||||||||||||||||| | || | ||||||||||||||||||||||| ||| ||||||||||| || | |||||||||||||||||||||||| |
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| T |
28736679 |
caagaattcatggatttggctaccaatgctggatttagtggcatcaaatatgtatgctgtgtctgtaacttctacgttatggagttctttaagtaaagaa |
28736580 |
T |
|
| Q |
102 |
catgt |
106 |
Q |
| |
|
||||| |
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|
| T |
28736579 |
catgt |
28736575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 28628159 - 28628056
Alignment:
| Q |
3 |
aagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaagagc |
102 |
Q |
| |
|
|||| ||||| |||||||||| || |||||||||||| ||||| | || |||||| ||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
28628159 |
aagagttcattgatttggcaactagagttggatttagaggcataagatgtgaatgctgtgttcgtaacttttgggttatggagttctttaagtgaagagc |
28628060 |
T |
|
| Q |
103 |
atgt |
106 |
Q |
| |
|
|||| |
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|
| T |
28628059 |
atgt |
28628056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28695478 - 28695376
Alignment:
| Q |
1 |
gcaagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaaga |
100 |
Q |
| |
|
||||||||| | |||||||||| || || ||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
28695478 |
gcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgaatgttgtgttcgtaacaaatgggttatggagttctttaagtaaaga |
28695379 |
T |
|
| Q |
101 |
gca |
103 |
Q |
| |
|
||| |
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|
| T |
28695378 |
gca |
28695376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 8466 - 8571
Alignment:
| Q |
1 |
gcaagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaaga |
100 |
Q |
| |
|
|||||| ||||| |||||||||| || ||||||||||| |||||| | || |||||||||||| |||| ||||||||||||||||||||||||| |||| |
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| T |
8466 |
gcaagagttcattgatttggcaactagagttggatttattggcataagatgtgaatgttgtgttcgtaacttttgggttatggagttctttaagtgaaga |
8565 |
T |
|
| Q |
101 |
gcatgt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
8566 |
gcatgt |
8571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 29648994 - 29649090
Alignment:
| Q |
2 |
caagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagtaaa |
98 |
Q |
| |
|
||||||||||||||| |||||| ||| | ||||||| |||||||||||||||||||||| | | |||||||||| ||||||||||||| ||||||| |
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|
| T |
29648994 |
caagaattcatggatatggcaactaatgctggatttcgtggcatcaaatatgaatgttgcatttataatttttggattatggagttcttcaagtaaa |
29649090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 49106392 - 49106297
Alignment:
| Q |
1 |
gcaagaattcatggatttggcaattaaagttggatttagtggcatcaaatatgaatgttgtgtctgtaatttttgggttatggagttctttaagta |
96 |
Q |
| |
|
|||||||||||||||||| |||| | || ||||||||||||||| | ||||||||||| |||| || ||||||||||||||||||||| ||||| |
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|
| T |
49106392 |
gcaagaattcatggatttagcaaatggagctggatttagtggcattagatatgaatgttatgtccatactttttgggttatggagttcttcaagta |
49106297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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