View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10498_low_7 (Length: 435)
Name: NF10498_low_7
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 41081335 - 41080922
Alignment:
| Q |
1 |
atacaaacaccaatgcagttccaaaaccaaatcttctacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttgcagctccaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41081335 |
atacaaacaccaatgcagttccaaaaccaaatcttttacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttgcagctccaatca |
41081236 |
T |
|
| Q |
101 |
cttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcctaagccaccatagataatgaaagaccaatctaaagttagtttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41081235 |
cttatttctaccaatcctgagcaagacaatatgacataacaaaggtctcaattgcctaagccaccatagataatgaaagaccaatctaaagttagtttta |
41081136 |
T |
|
| Q |
201 |
acattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacgacataacacccct |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41081135 |
acattaggcatgagtagaaccat----attggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacgacataacccccct |
41081040 |
T |
|
| Q |
301 |
acttatcatactccaccataatataaaatagaagcagctgtcttatatatgcagattatacaaaataaattacctaaaatattaaccgcagatgcctcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41081039 |
acttatcatactccaccataatataaaatagaagcagctgtcttatatatgcagattatacaaaataaattacctaaaatattaaccgcagatgcctcaa |
41080940 |
T |
|
| Q |
401 |
aatatgcagattacacac |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41080939 |
aatatgcagattacacac |
41080922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 95 - 418
Target Start/End: Complemental strand, 41089251 - 41088932
Alignment:
| Q |
95 |
caatcacttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcctaagccaccatagataatgaaagaccaatctaaagtta |
194 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
41089251 |
caatcacatatttctaccaatcctaagcaagacaatatgacataactaaagtctcaattgcctaagccaccatagataacgaaagaccaatctaaaggta |
41089152 |
T |
|
| Q |
195 |
gttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacgacataac |
294 |
Q |
| |
|
|||||||||||| |||||| |||||||||| | ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
41089151 |
gttttaacattatgcatgactagaaccataat----ggtaagggataagctatgatttagattcgttaaaatgccatttcctgtcaagaaaccacatcag |
41089056 |
T |
|
| Q |
295 |
acccctacttatcatactccaccataatataaaatagaagcagctgtcttatatatgcagattatacaaaataaattacctaaaatattaaccgcagatg |
394 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||| | || || |
|
|
| T |
41089055 |
accccggcttatcaaactccaccatgatataaaatagaagcagctgcctcatatatgtagattatacaaaataaattacctagaatattaacagtagctg |
41088956 |
T |
|
| Q |
395 |
cctcaaaatatgcagattacacac |
418 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41088955 |
cctcaaaatatgcagattacacac |
41088932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 92 - 330
Target Start/End: Complemental strand, 41103642 - 41103396
Alignment:
| Q |
92 |
ctccaatcacttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcct-------------aagccaccatagataatgaaa |
178 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||| || | ||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
41103642 |
ctccaatcacttatttcgaccaatcctaagcaagacagtataactttactaaggtctcaattgccttattatacacagcaagccaccatagataacgaaa |
41103543 |
T |
|
| Q |
179 |
gaccaatctaaagttagttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgt |
278 |
Q |
| |
|
| ||||| ||||| |||||| ||||||| |||||||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
41103542 |
ggccaatttaaaggtagtttcaacattatgcatgagtagaatcat----attggtaacggataagctatgattttaattggttaaaatggcattt-ctgt |
41103448 |
T |
|
| Q |
279 |
caagaaacgacataacacccctacttatcatactccaccataatataaaata |
330 |
Q |
| |
|
|||||||| |||| | |||| ||||||| |||||||||| |||||||||| |
|
|
| T |
41103447 |
caagaaaccacatcagaccctggcttatcaaactccaccatgatataaaata |
41103396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 41089359 - 41089292
Alignment:
| Q |
19 |
ttccaaaaccaaatcttctacgcgtcaa-agaaaattctcattcttgcacattgaggttccatgaatc |
85 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
41089359 |
ttccaaaaccaaatcttctacgcctcaacaaaaaattctcattcttgcatattaaggtcacatgaatc |
41089292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 41103707 - 41103664
Alignment:
| Q |
55 |
ctcattcttgcacattgaggttccatgaatcttgcagctccaat |
98 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41103707 |
ctcattgttgcacattgaggtcccatgaatcttgcagctccaat |
41103664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 4132197 - 4132286
Alignment:
| Q |
9 |
accaatgcagttccaaaaccaaatcttctacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttgcagctccaat |
98 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| |||| ||||||| |||| |||||||| ||||||||| || ||||||||| |
|
|
| T |
4132197 |
accaatacagttccaaaaccaaatcttctacgcctcaacaaaaagtctcattgctgcatattgaggtcccatgaatcatgtagctccaat |
4132286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University