View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10498_low_80 (Length: 207)
Name: NF10498_low_80
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_80 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 43021351 - 43021522
Alignment:
| Q |
20 |
gtagcagaatcgtacaaaaaggaaaggatgcaaaaggcagatgttgctattttacaacggtgcaaatatttgatttgcaagttaaaactctatcaaactt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43021351 |
gtagcagaatcgtacaaaaaggaaaggatgcaaaaggcagatgttgctattttacaacggtgcaaatatttgatttgcaagttaaaactctatcaaactt |
43021450 |
T |
|
| Q |
120 |
cttaaacatgcatataagaaaaaacatgcaatagcaagggtaaaggctgacgtcatacctatgaggtggatg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43021451 |
cttaaacatgcatataagaaaaaacatgcaatagcaagggtaaaggctgacgtcatacctatgaggtggatg |
43021522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 35060049 - 35060224
Alignment:
| Q |
20 |
gtagcagaatcgtacaaaaaggaaaggatgcaaaaggcagatgttgctattttacaacggtgcaaatatttgatttgcaa----gttaaaactctatcaa |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
35060049 |
gtaggagaatcgtacaaaaaggaaaggatgcaaaaggcagatgttgctattttacagcggtgcaaatatttgacttgcaagcaagttaaaactctatcaa |
35060148 |
T |
|
| Q |
116 |
acttcttaaacatgcatataagaaaaaacatgcaatagcaagggtaaaggctgacgtcatacctatgaggtggatg |
191 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35060149 |
acttcttaaacatgcatataagaacaaacatgcaatagcagggggaaaggctgacgtcatacctatgaggtggatg |
35060224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 42810542 - 42810676
Alignment:
| Q |
20 |
gtagcagaatcgtacaaaaaggaaaggatgcaaaaggcagat---------------gttgctattttacaacggtgcaaatatttgatttgcaagttaa |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42810542 |
gtaggagaatcgtacaaaaaggaaaggatgcaaaaggcagataataaagtcttaaatgttgctattttacaacggtgcaaatatttgacttgcaagttaa |
42810641 |
T |
|
| Q |
105 |
aactctatcaaacttcttaaacatgcatataagaa |
139 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
42810642 |
aactctatcaaactgcttaaacatgcatataagaa |
42810676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 42811116 - 42811161
Alignment:
| Q |
145 |
atgcaatagcaagggtaaaggctgacgtcatacctatgaggtggatg |
191 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
42811116 |
atgcaatagcagggg-aaaggctaacgtcatacctatgaggtggatg |
42811161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University