View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10498_low_9 (Length: 401)
Name: NF10498_low_9
Description: NF10498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10498_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 33392200 - 33391827
Alignment:
| Q |
17 |
aacaagtaataaactcagccatactttactaagaataatcaaacatctactgtagtgtgtatgagccgaaaataaaatgcttacagaaaacctttgtttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33392200 |
aacaagtaataaactcagccatactttactaagaataatcaaacatctactgtagtgtgtatgagccgaaaataaaatgcttacagaaaacctttgtttg |
33392101 |
T |
|
| Q |
117 |
aatgtaacaaatttgttctcataaagaaagttttttcataatgtgtcaatagggcatcaaaaccccgctgaaaataaataaaagaccatatggcaatagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33392100 |
aatgtaacaaatttgttctcataaagaaagttttttcataatgtgtcaatagggcatcaaaaccccgctgaaaataaataaaagaccatatggcaatagg |
33392001 |
T |
|
| Q |
217 |
gaaagctgtgtgtcaataggcaacccgtgaattccagagatattccactatgnnnnnnnggtgccatgaaatcatgggagtttatctttagcacccaaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33392000 |
gaaagctgtgtgtcaataggcaacccgtgaattccagagatattccactatgaaaaaaaggtgccatgaaatcatgggagtttatctttagcacccaaaa |
33391901 |
T |
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| Q |
317 |
tctcaaaagtctcaagtttatcgtttaaaatattaatatgaaagttgttctttagacatttagtaattgccttt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33391900 |
tctcaaaagtctcaagtttatcgtttaaaatattaatatgaaagttgttctttagacatttagtaattgccttt |
33391827 |
T |
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