View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_high_1 (Length: 681)
Name: NF10499_high_1
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 226 - 663
Target Start/End: Original strand, 35487261 - 35487697
Alignment:
| Q |
226 |
aaggtaaaaacggaaacctagcatgataccgttcaaacaaattaacacctaaactgagaactcaatttctcaatcgaatcaatctcatatgtaatattca |
325 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35487261 |
aaggtaaaaacagaaacctagcatgataccgttcaaacaaattaacacctgaactgaaaactcaatttctcaatcgaatcaatctcatatgtaatattct |
35487360 |
T |
|
| Q |
326 |
cgtcatatctcattttgtatacaactagaacaaattaagtatgaacaaatcacttgcttagacgataaactaagctagaatcaacaatatattagtaaca |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
35487361 |
cgtcatatctcattttgtatacaactagaacaaattaagtatgaacaaatcacttgcttaaatgataaactaagctagaatcaacaatatattagtaaca |
35487460 |
T |
|
| Q |
426 |
agattcaggaaacatattgttgattgtagcatctaatcaaatatatataataagtatctaatattgaatgcaatgcatctaacattctcgttacatcaaa |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35487461 |
agattcaggaaacatattgttgattgtagcatctaatcaaatatatataataagtatctaatattgaatgcaatgcatctaacattctcgttacatcaaa |
35487560 |
T |
|
| Q |
526 |
agaacaaattaagcacaatcaaattacttgcttaatcgaatatataaaaccagaacaaattaatcacgaaaaaatcacttaaacgataaattcaactata |
625 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35487561 |
agaacaaattaagcacaatcaaattacttgcttaat-gaatgtaaaaaactagaacaaattaatcacgaaaaaatcacttaaacgataaattcaactata |
35487659 |
T |
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| Q |
626 |
atcaacaacaaaatcacttgctgaatcaaatgcatgac |
663 |
Q |
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| T |
35487660 |
atcaacaacaaaatcacttgctgaatcaaatgcatgac |
35487697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 35487048 - 35487237
Alignment:
| Q |
19 |
atcacgcaacatactaatgttcaaacaaacacctgaactgaacgttcaagttctcaatcgaattaatctcataagtatctaataatttaaacgaatgtat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35487048 |
atcacgcaacatactaatgttcaaacaaacacctgaactgaacgttcaagttctcaatcgaattaatctcataagtatctaataatttaaatgaatgtat |
35487147 |
T |
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| Q |
119 |
ctaatctcgccacgtcccattctacataaaattagaacagattataatgcagtaacaagattcttgaaaccttatcttgagtgtgaaaga |
208 |
Q |
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| T |
35487148 |
ctaatctcgccacgtcccattctacataaaattagaacagattataatgcagtaacaagattcttgaaaccttatcttgagtgtgaaaga |
35487237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 5333142 - 5333047
Alignment:
| Q |
226 |
aaggtaaaaacggaaacctagcatgataccgttcaaacaaattaacacctaaactgagaactcaatttctcaatcgaatcaatctcatatgtaata |
321 |
Q |
| |
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|||||| |||| ||||||||||||||||| ||||||| |||||||||||| ||| || |||||||||||||||| |||||||||||||| |||||| |
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| T |
5333142 |
aaggtacaaacagaaacctagcatgatacggttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaata |
5333047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 38274832 - 38274927
Alignment:
| Q |
226 |
aaggtaaaaacggaaacctagcatgataccgttcaaacaaattaacacctaaactgagaactcaatttctcaatcgaatcaatctcatatgtaata |
321 |
Q |
| |
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|||||| |||| ||||||||||| ||||| |||||||||||||||||||| ||| || |||||||||||||||| |||||||||||||| |||||| |
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| T |
38274832 |
aaggtacaaacagaaacctagcaagatacggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaata |
38274927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 29518944 - 29519009
Alignment:
| Q |
256 |
gttcaaacaaattaacacctaaactgagaactcaatttctcaatcgaatcaatctcatatgtaata |
321 |
Q |
| |
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||||||| |||||||||||| ||| || |||||||||||||||| |||||||||||||| |||||| |
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| T |
29518944 |
gttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaata |
29519009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 38274946 - 38274989
Alignment:
| Q |
317 |
taatattcacgtcatatctcattttgtatacaactagaacaaat |
360 |
Q |
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|||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
38274946 |
taatattctcgtcacatcacattttgtatacaactagaacaaat |
38274989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 38274982 - 38275036
Alignment:
| Q |
368 |
gaacaaatcacttgcttagacgataaactaagctagaatcaacaatatattagta |
422 |
Q |
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||||||||||| | |||| | ||||| |||| ||||||||||||||||||||||| |
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| T |
38274982 |
gaacaaatcaccttcttaaatgataagctaaactagaatcaacaatatattagta |
38275036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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