View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_high_15 (Length: 240)
Name: NF10499_high_15
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24268551 - 24268770
Alignment:
| Q |
1 |
ttttcagcctgatattactgcaccaggtgtggacattctttatgcttacataggagccataagtccaactggtctagcatcagataatcgtcggattcca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24268551 |
ttttcagcctgatattactgcaccaggtgtggacattctttatgcttacataggagccataagtccaactggtctagcatcagataatcaatggattcca |
24268650 |
T |
|
| Q |
101 |
tataatatagggtcaggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagctttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24268651 |
tataatatagggtcaggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaattggagtcctgcagctttta |
24268750 |
T |
|
| Q |
201 |
aatctgctatcatgactaca |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
24268751 |
aatctgctatcatgactaca |
24268770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 31144832 - 31144731
Alignment:
| Q |
115 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
214 |
Q |
| |
|
|||||||||||| || || ||||||||| || || || || ||| |||||||| || ||||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
31144832 |
aggaacttctatgtcttgtcctcatgttgttggcactgctggacttatcaaaacacttcatcctaattggagtcctgcagctattaaatcagctatcatg |
31144733 |
T |
|
| Q |
215 |
ac |
216 |
Q |
| |
|
|| |
|
|
| T |
31144732 |
ac |
31144731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 31162656 - 31162555
Alignment:
| Q |
115 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
214 |
Q |
| |
|
|||||||||||| || || ||||||||| ||| || || || ||| |||||||| || ||||||| |||||||| |||||| ||||||| ||||||||| |
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| T |
31162656 |
aggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctatcatg |
31162557 |
T |
|
| Q |
215 |
ac |
216 |
Q |
| |
|
|| |
|
|
| T |
31162556 |
ac |
31162555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 31049760 - 31049652
Alignment:
| Q |
115 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
214 |
Q |
| |
|
|||||||||||| || || ||||||||| ||| || || || ||| |||||||| || ||||||| |||||||| |||||| ||||||| ||||| ||| |
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|
| T |
31049760 |
aggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatg |
31049661 |
T |
|
| Q |
215 |
actacaggt |
223 |
Q |
| |
|
|| |||||| |
|
|
| T |
31049660 |
accacaggt |
31049652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 31202981 - 31203089
Alignment:
| Q |
115 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
214 |
Q |
| |
|
|||||||||||| || |||||||||||| | | ||||| | ||| |||||||| | ||||||| |||||||| |||||| ||||||| ||||||||| |
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|
| T |
31202981 |
aggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacattgcatcctaattggagtccagcagctattaaatcagctatcatg |
31203080 |
T |
|
| Q |
215 |
actacaggt |
223 |
Q |
| |
|
|| |||||| |
|
|
| T |
31203081 |
accacaggt |
31203089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 31062083 - 31061982
Alignment:
| Q |
115 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
214 |
Q |
| |
|
|||||||||||| || |||||||||||| ||| | || || ||| |||||||| || ||||||| |||||||| |||||| ||||||| ||||| ||| |
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|
| T |
31062083 |
aggaacttctatgtcttgccctcatgttgctgggactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatg |
31061984 |
T |
|
| Q |
215 |
ac |
216 |
Q |
| |
|
|| |
|
|
| T |
31061983 |
ac |
31061982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 42315247 - 42315347
Alignment:
| Q |
116 |
ggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatga |
215 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||| | | |||||||||||| || ||||||| |||||||| |||||| | ||||| ||||| |||| |
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|
| T |
42315247 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
42315346 |
T |
|
| Q |
216 |
c |
216 |
Q |
| |
|
| |
|
|
| T |
42315347 |
c |
42315347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 37016464 - 37016360
Alignment:
| Q |
115 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaactggagtcctgcagcttttaaatctgctatcatg |
214 |
Q |
| |
|
||||||||| || || || ||||||||| ||| |||||| | ||||||||| ||| || |||||| |||||||| || || | |||||||| |||||| |
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|
| T |
37016464 |
aggaacttcaatgtcttgtcctcatgttgctggcattgtcggtcttctcaagacacttcatcctagttggagtccagctgccatcaaatctgccatcatg |
37016365 |
T |
|
| Q |
215 |
actac |
219 |
Q |
| |
|
||||| |
|
|
| T |
37016364 |
actac |
37016360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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