View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_high_4 (Length: 397)
Name: NF10499_high_4
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_high_4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 40456996 - 40457376
Alignment:
| Q |
18 |
caagtaactatgttaaggcttggtatctaataactttactaccttccaatacaaaaatggttcaataaactcatccggcaactggtttaccgttgctagc |
117 |
Q |
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| T |
40456996 |
caagtaactatgttaaggcttggtatctaataactttactaccttccaatacaaaaatggttcaataaactcatccggcaactggtttaccgttgctagc |
40457095 |
T |
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| Q |
118 |
aattgtctatcacatgagccttatcgagaatctttaattgtaaattctttaacaattcatttttatgtttttaagtaccaattttatcttcaatactata |
217 |
Q |
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| T |
40457096 |
aattgtttatcacatgagccttatcgagaatctttaattgtaaattttttaacaattcatttttatgtttttaagtaccaattttatcttcaatactata |
40457195 |
T |
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| Q |
218 |
ctctctcatattccctctcccaattttgcacttccaaatgaataaaaataatattttattgttctgtcaccnnnnnnnntatcataacaaaagatataac |
317 |
Q |
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| T |
40457196 |
ctctctcatattccctctcccaattttgcacttccaaatgaataaaaataatattttattgttctgtcaccaaaaaaaatatcacaacaaaagatataac |
40457295 |
T |
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| Q |
318 |
actttaattcatttttattatctttnnnnnnnntcatttttattttatgtaattatc--tcagtggggatatatttgtcttt |
397 |
Q |
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| T |
40457296 |
acttcaattcatttttattatctttaaaaaaaa-catttttattatatgtaattatctttgagtggggatacatttgtcttt |
40457376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 40285951 - 40285882
Alignment:
| Q |
18 |
caagtaactatgttaaggcttggtatctaataactttactaccttccaatacaaaaatggttcaataaac |
87 |
Q |
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| T |
40285951 |
caagtaactatgttaaggcttagtatctaataactttactaccttccaatacaaaaatggttcaataaac |
40285882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 40285841 - 40285794
Alignment:
| Q |
352 |
catttttattttatgtaattatc--tcagtggggatatatttgtcttt |
397 |
Q |
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| T |
40285841 |
catttttattttatgtaattatctttgagtggggatacatttgtcttt |
40285794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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