View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10499_high_5 (Length: 386)
Name: NF10499_high_5
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10499_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 5685851 - 5686222
Alignment:
| Q |
1 |
tcaatacttgaacaaaagttgctgaagagtgaagactatatgtctgggccaagttaatgagaaagaccaaatgcagaaatgtgtggaaatgtaagaatct |
100 |
Q |
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| T |
5685851 |
tcaatacttgaacaaaagttgctgaagagtgaagactatatgtctgggccaagttaatgagaaagaccaaatgcagaaatgtgtggaaatgtaagaattt |
5685950 |
T |
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| Q |
101 |
agaaccataatccaaatgttttattaaagagtggtatattatgttgtacaatgatagtgctactatgcatccatgtgaataatgaaagatgataattgga |
200 |
Q |
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| T |
5685951 |
agaaccataatccaaatgttttattaaagagtggtatattatgttgtacaatgatagtgctactatgcatccatgtgaataatgaaagatgataattgga |
5686050 |
T |
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| Q |
201 |
aatgagtggttttgatttatattggacaaaattgtaccatattttatatatttaaatattctacctcttttaaaagtagaccaaccttaatcctttatat |
300 |
Q |
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| T |
5686051 |
aatgagtggttttgatttatattggacaaaattgtaccatattttatatacttaaatattctatctcttttaaaagtagaccaaccttaatcctttatat |
5686150 |
T |
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| Q |
301 |
tgttgggaaataaatcatacccatatatagttacttttaacatgtttggtcctttcattcccacaattattg |
372 |
Q |
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| T |
5686151 |
tgttgggaaataaatcatacccatatatagttacttttaacatgtttggtcctttcattcccacaattattg |
5686222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 5697709 - 5697881
Alignment:
| Q |
78 |
aatgtgtggaaatgtaagaatctagaaccataatccaaatgttttattaaagagtggtatatt-atgttgtacaatgatagtgctactatgcatccatgt |
176 |
Q |
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| T |
5697709 |
aatgtgtggaaatgtaagaatttagaaccataatccaaatgttttattaaagagtggtaaatttatgttgtacaatgatagtgttactatgcatccatgt |
5697808 |
T |
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| Q |
177 |
gaataatgaaagatgataattggaaatgagtggttttgatttatattggacaaaattgtaccatattttatat |
249 |
Q |
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| T |
5697809 |
gaataatgaaagatgataattggaaatgagtggtttggatttatattggacaaaattgtaccatgttttatat |
5697881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 5697891 - 5697979
Alignment:
| Q |
282 |
caaccttaatcctttatattgttgggaaataaatcataccca---tatatagttacttttaacatgtttggtcctttcattcccacaat |
367 |
Q |
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| T |
5697891 |
caaccttaatccttgatattgttgggaaataaatcattcccatattatatagttacttttaacatgtttggttatttcattcccacaat |
5697979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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