View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10499_high_6 (Length: 348)

Name: NF10499_high_6
Description: NF10499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10499_high_6
NF10499_high_6
[»] chr8 (2 HSPs)
chr8 (34-314)||(9693439-9693719)
chr8 (163-314)||(9677698-9677849)
[»] chr4 (2 HSPs)
chr4 (178-314)||(35160435-35160571)
chr4 (178-314)||(35154044-35154180)
[»] chr3 (10 HSPs)
chr3 (153-314)||(5155162-5155320)
chr3 (181-314)||(4582560-4582693)
chr3 (181-286)||(46469609-46469714)
chr3 (205-297)||(51942045-51942137)
chr3 (203-255)||(4614283-4614335)
chr3 (206-314)||(46489970-46490084)
chr3 (191-309)||(16023876-16023994)
chr3 (206-312)||(46497287-46497399)
chr3 (224-288)||(46478252-46478316)
chr3 (263-309)||(45900897-45900943)
[»] chr2 (3 HSPs)
chr2 (182-314)||(20154344-20154476)
chr2 (159-314)||(20143419-20143571)
chr2 (182-314)||(20169939-20170071)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 34 - 314
Target Start/End: Complemental strand, 9693719 - 9693439
Alignment:
Q  34 caattcaaggttatttctcttctctctattattcttgtgttcccgattttagaagaattagggttttacttgttttcaaatttcaaaccctaatcgattc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9693719 caattcaaggttatttctcttctctctattattcttgtgttcccgattttagaagaattagggttttacttgttttcaaatttcaaaccctaatcgattc 9693620  T
Q  134 tggtacagttgaaaaatcaaaagaagaagaacaatggctcaccttgatgaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctct 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9693619 tggtacagttgaaaaatcaaaagaagaagaacaatggctcaccttgatgaatcaagcaccaaccaagcgaaattttccctcaccatcgccaaacatctct 9693520  T
Q  234 tctcaaaagaatcagacaagaatgtcgtcttttcaccactgtctctccaagttgttctcagcatcattgctgctggctctg 314  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  9693519 tctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgttggctctg 9693439  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 9677849 - 9677698
Alignment:
Q  163 aacaatggctcaccttgatgaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtc 262  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||    
T  9677849 aacaatggctcaccttgatcaatcaagcaccaaccatgcgaaagtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtc 9677750  T
Q  263 ttttcaccactgtctctccaagttgttctcagcatcattgctgctggctctg 314  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  9677749 ttttcaccattgtctctccaagttgttctcagtatcatcgctgctggctctg 9677698  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 35160435 - 35160571
Alignment:
Q  178 tgatgaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtct 277  Q
    |||||||||||||| ||||||| |||||||||| |||||||| | ||||||||||||||| ||||||||||| |||||  |||| ||||| ||| |||||    
T  35160435 tgatgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtct 35160534  T
Q  278 ctccaagttgttctcagcatcattgctgctggctctg 314  Q
    ||||||||||| |||||||| ||  ||||||||||||    
T  35160535 ctccaagttgtgctcagcataatcactgctggctctg 35160571  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 35154044 - 35154180
Alignment:
Q  178 tgatgaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtct 277  Q
    |||||||||||||  ||||||  |||||||||||||||| |||||||||||||| |||||||| |||||||| |||||| |||| ||||| ||  |||||    
T  35154044 tgatgaatcaagctgcaaccatacgaaagtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtct 35154143  T
Q  278 ctccaagttgttctcagcatcattgctgctggctctg 314  Q
    |||||||| || ||    ||||| |||||||||||||    
T  35154144 ctccaagtagtgcttgcaatcatcgctgctggctctg 35154180  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 153 - 314
Target Start/End: Original strand, 5155162 - 5155320
Alignment:
Q  153 aaagaagaagaacaatggctcaccttgatgaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaa 252  Q
    |||||| |||||||||||||| ||   ||||||||| |||||||||| | || ||||||||   ||||||||||||||| ||||  ||||||| ||||||    
T  5155162 aaagaaaaagaacaatggctctcc---atgaatcaatcaccaaccaaacaaatgtttccctacgcatcgccaaacatctgttcttgaaagaattagacaa 5155258  T
Q  253 gaatgtcgtcttttcaccactgtctctccaagttgttctcagcatcattgctgctggctctg 314  Q
    |||  | || ||||| ||||||||||| |||||||| || |||||||| |||||||||||||    
T  5155259 gaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctg 5155320  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 4582693 - 4582560
Alignment:
Q  181 tgaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtctctc 280  Q
    |||||||| ||| |||||| | |||||||||||||  ||||||||| |||||||||||||||||||||| |||||  | || ||||| ||||| || |||    
T  4582693 tgaatcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctc 4582594  T
Q  281 caagttgttctcagcatcattgctgctggctctg 314  Q
    |||||||  |||||||| || |||||||||||||    
T  4582593 caagttgcgctcagcatgatcgctgctggctctg 4582560  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 46469609 - 46469714
Alignment:
Q  181 tgaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtctctc 280  Q
    |||||||| |||||||||| | ||||||||||| | ||| ||||||||||||||||||||||||||||||||||| || || ||||| || ||||| |||    
T  46469609 tgaatcaatcaccaaccaaaccaaagtttcccttaacatggccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcactc 46469708  T
Q  281 caagtt 286  Q
    ||||||    
T  46469709 caagtt 46469714  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 51942045 - 51942137
Alignment:
Q  205 agtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtctctccaagttgttctcagcat 297  Q
    |||||||||||  |||||||||||| | ||||||||| ||||||| || ||  |||||||||| ||| ||||||| |||||||| ||||||||    
T  51942045 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgccattgtctctgcaagttgtgctcagcat 51942137  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 4614335 - 4614283
Alignment:
Q  203 aaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaa 255  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||| |||||    
T  4614335 aaagtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaa 4614283  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 46489970 - 46490084
Alignment:
Q  206 gtttccctcaccatcgccaaacatctcttctcaaaagaatc------agacaagaatgtcgtcttttcaccactgtctctccaagttgttctcagcatca 299  Q
    |||||||||||||||||||||||||| ||||| ||||||||        |||||||  | || || || ||||| || ||||||||||| ||||||||||    
T  46489970 gtttccctcaccatcgccaaacatcttttctccaaagaatctcaccggaacaagaacattgtgttatcgccactttcgctccaagttgtactcagcatca 46490069  T
Q  300 ttgctgctggctctg 314  Q
    | |||||||||||||    
T  46490070 tcgctgctggctctg 46490084  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 16023876 - 16023994
Alignment:
Q  191 accaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtctctccaagttgttc 290  Q
    ||||||||| | || || ||||||| ||||| |||||||||||| |||||| |||||||||| ||  || | ||||| || || || || ||||||||||    
T  16023876 accaaccaaaccaacgtatccctcaacatcgtcaaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttc 16023975  T
Q  291 tcagcatcattgctgctgg 309  Q
    ||||| | || ||||||||    
T  16023976 tcagccttatcgctgctgg 16023994  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 312
Target Start/End: Original strand, 46497287 - 46497399
Alignment:
Q  206 gtttccctcaccatcgccaaacatctcttctcaaaagaatc------agacaagaatgtcgtcttttcaccactgtctctccaagttgttctcagcatca 299  Q
    |||||||||||||||||||||||||| ||||| ||||||||      |||||||||| | || || || ||||| || || |||||||| || |||||||    
T  46497287 gtttccctcaccatcgccaaacatcttttctccaaagaatctcatcaagacaagaatatggtgttatctccactttcactacaagttgtgctaagcatca 46497386  T
Q  300 ttgctgctggctc 312  Q
    | ||| |||||||    
T  46497387 tcgctactggctc 46497399  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 46478252 - 46478316
Alignment:
Q  224 aaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtctctccaagttgt 288  Q
    |||||||||||||| |||||||||||||| ||  |||| ||||| ||||| || |||||||||||    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgt 46478316  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 45900897 - 45900943
Alignment:
Q  263 ttttcaccactgtctctccaagttgttctcagcatcattgctgctgg 309  Q
    ||||| ||||| || ||||||||| ||||||||||||||||||||||    
T  45900897 ttttctccactctcgctccaagttattctcagcatcattgctgctgg 45900943  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 20154344 - 20154476
Alignment:
Q  182 gaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtctctcc 281  Q
    ||||||| ||||||||||   || |||| ||||  ||||||||||||||| ||||  ||| |||||||||||||  | || ||||| ||| |||| ||||    
T  20154344 gaatcaatcaccaaccaaataaaggttttcctcgacatcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactcc 20154443  T
Q  282 aagttgttctcagcatcattgctgctggctctg 314  Q
    |||||||  ||||| |||  |||||||||||||    
T  20154444 aagttgtgttcagcctcaccgctgctggctctg 20154476  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 314
Target Start/End: Original strand, 20143419 - 20143571
Alignment:
Q  159 gaagaacaatggctcaccttgatgaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgt 258  Q
    |||||||||||||||   || | ||||||| ||| |||||| | || |||||||||  |||||||| |||||| || |  ||| |||||||||||||  |    
T  20143419 gaagaacaatggctc---ttcaagaatcaatcactaaccaaacaaaggtttccctcgacatcgccagacatctgttgttgaaacaatcagacaagaacat 20143515  T
Q  259 cgtcttttcaccactgtctctccaagttgttctcagcatcattgctgctggctctg 314  Q
    ||| ||||| ||||| || |||||| |||| |||||| | || |||||||| ||||    
T  20143516 cgtgttttcgccactatcactccaaattgtgctcagccttatcgctgctggttctg 20143571  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 20170071 - 20169939
Alignment:
Q  182 gaatcaagcaccaaccaagcgaaagtttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccactgtctctcc 281  Q
    ||||||| ||| |||||| | || |||||||||  ||| |||| |||||| || |  ||| |||||||||| || ||||| ||||||||||| || || |    
T  20170071 gaatcaatcactaaccaaacaaaggtttccctcgacatggccagacatctgttgttgaaacaatcagacaaaaacgtcgtgttttcaccactatcacttc 20169972  T
Q  282 aagttgttctcagcatcattgctgctggctctg 314  Q
    || |||| |||||| | |||||| |||| ||||    
T  20169971 aaattgtgctcagccttattgctactggttctg 20169939  T

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